Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00138 ATGAATAGAGGTGTTGTTCAAAGCTCACCGGTGCAACAAATGATGGCAGGGAACCCTAATTGGTGGAACATCAATATCAATAACATGAGGCCCCCAACTCCACAAGCTTCTCCTTTCTTGTCCACTCCTAACTTTCTTACCCCATATGCCCCCACTTCTTCTTCTTCTTCTCTTCCCTTTCCTTCTTGGCATGAAAATCAAGAGCTTCCTGAGTCATGGAGCCAACTACTCATGAGTGGACTTGTGGCTGAAGATAAGGCTTGTATGAACCAATTTCAGAATCAAATGCTAAGTCAAGCTCCAAATGCTTCTCTTGTTGATGTTAAACAAGAAAGTTCTGGGAACAGCTATGCATATAGGCATGGGAATGAAGAACTTCAATCAGCAAAGTCTTCTTGGTCTCCAAAATCATGTGTCACCGGTTTCAGAAGTAGCAACATGTTGGATTTCTCTAACAATAATACTGATGCAAGGCATCCACCACCAGATCAATCTTCTGAGTGCAACAGCACTGCATCTGGTGGGGCACTCAAGAAAGCTAGGGTTCAACCATCTACATCTCAATCTACCTTCAAGGTTAGGAAGGAGAAGTTAGGAGATAGAATCACTTCTCTACATCAACTGGTTTCCCCATTTGGGAAGACTGACACGGCCTCTGTCTTGTTAGAAGCTATTGGATATATCAGATTCCTTCAGAGTCAAATTGAGGCCCTTAGCTTACCATACCTGAGCAGTGGATCAGGAAACATGAGGCACCAACATCCGGTTCAGGGAGAGAAGAATTGTAAATTCCCTGAAGACCCTGGTCAGCTGCTAAATGATAACTGCTTGAAGAGGAAAGCAACTGAGGAGCAGGATTCTCAAGGAGAACCAAAGAAGGACTTGAGGAGTAGAGGGTTGTGTCTGGTTCCAGTGTCATGCACACTTCAAGTTGGTAGTGACAATGGAGCTGATTATTGGGCTCCAACATTTGGAGGGGGCTTTCAGTGA 990 0.4434 MNRGVVQSSPVQQMMAGNPNWWNININNMRPPTPQASPFLSTPNFLTPYAPTSSSSSLPFPSWHENQELPESWSQLLMSGLVAEDKACMNQFQNQMLSQAPNASLVDVKQESSGNSYAYRHGNEELQSAKSSWSPKSCVTGFRSSNMLDFSNNNTDARHPPPDQSSECNSTASGGALKKARVQPSTSQSTFKVRKEKLGDRITSLHQLVSPFGKTDTASVLLEAIGYIRFLQSQIEALSLPYLSSGSGNMRHQHPVQGEKNCKFPEDPGQLLNDNCLKRKATEEQDSQGEPKKDLRSRGLCLVPVSCTLQVGSDNGADYWAPTFGGGFQ* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00138 329 Gene3D - 188 242 IPR036638 GO:0046983
Rops5g00138 329 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 182 231 IPR011598 GO:0046983
Rops5g00138 329 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 77 311 - -
Rops5g00138 329 MobiDBLite consensus disorder prediction 149 193 - -
Rops5g00138 329 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 192 243 IPR036638 GO:0046983
Rops5g00138 329 MobiDBLite consensus disorder prediction 149 173 - -
Rops5g00138 329 FunFam transcription factor bHLH68 isoform X1 189 242 - -
Rops5g00138 329 CDD bHLH_AtbHLH_like 190 239 IPR045239 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00138 Rops-Chr5 2267420 2271649 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00138 1 271 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G29100 45.070 5.78e-65 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00138 - - gmx:100786555 506.908
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops5g00138 5 2267420 2271649 Rops5g00138 5 2267420 2271649 ECH
Rops2g00293 2 4522077 4539519 Rops5g00138 5 2267420 2271649 PCT