Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00137 ATGCAAGGCTATGTAGGCTTAGCAGAGGTTCCTACAATGGAAAAAAGCTCTGACAAGTTTTCGGAAAGGACTAACAGTGGCTTAAACCTTAAGGCTACTGAACTAAGACTTGGCTTACCTGGTTCTGAGTCACCAGAAAGAGATGGTGTTGTTGGTGTTGAGGACAACAAGAATAATGTGTACCCTTTAGGCATGCTTAAGAGTTTGGTGTCTGGGGCTAAAAGGGGTTTCTCAGATGCCATTGATGGTGGTTCTGGAAGGTGGCTTCTCTCTGGGAATGGTGGATCTGATGTGGGGTTGTGTAAAGATGGTGGTTTGTTCTCTCCAAGGGGTGTTGTTGGGGCCGAGTGTAACAACCAACAAGTATCTGTTATGAAAGATAAAGTTCCTACTCAGTCTCCAAAGCCATTGAATGAGAAGAAGCCTCAGATATCTGCTCCTGCTGCAAAGGAACAGGTTGTGGGATGGCCACCAATCCGTTCTTTCAGGAAGAATTCAATGGCCACTCAGCCTCAAAAGAATGATGATGATGCAGAAGCCAAGTCTGGATGCCTATATGTAAAAGTCAGCATGGATGGTGCTCCATACTTGAGGAAAGTGGATCTAAAATTTTTTGGCACTTACAGGGAGCTATCTTCAGCACTGGAAAAGATGTTTAGTTGTTTTACAATGAGTCAATGTGACTCTCATGGAGTTTCTAGTAGAGATAAGTTGAGTGAAAGTAGATTGATGGATCTCCTTCATGGTTCAGAATATGTGCTCACCTATGAAGACAAGGATGGTGATTGGATGCTAGTTGGCGATGTTCCATGGGAGATGTTCACTGACTCTTGCAAGAGGTTGAGGATAATGAAAAGTTCTGAAGCAATTGGACTAGCACCAAGAGCCATGGAAAAGTGCAAAAGTCGCAACTAG 915 0.4372 MQGYVGLAEVPTMEKSSDKFSERTNSGLNLKATELRLGLPGSESPERDGVVGVEDNKNNVYPLGMLKSLVSGAKRGFSDAIDGGSGRWLLSGNGGSDVGLCKDGGLFSPRGVVGAECNNQQVSVMKDKVPTQSPKPLNEKKPQISAPAAKEQVVGWPPIRSFRKNSMATQPQKNDDDAEAKSGCLYVKVSMDGAPYLRKVDLKFFGTYRELSSALEKMFSCFTMSQCDSHGVSSRDKLSESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTDSCKRLRIMKSSEAIGLAPRAMEKCKSRN* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00137 304 MobiDBLite consensus disorder prediction 129 151 - -
Rops5g00137 304 SUPERFAMILY CAD & PB1 domains 181 285 - -
Rops5g00137 304 ProSiteProfiles PB1 domain profile. 184 286 IPR000270 GO:0005515
Rops5g00137 304 FunFam Auxin-responsive protein 179 296 - -
Rops5g00137 304 Pfam AUX/IAA family 33 295 IPR033389 -
Rops5g00137 304 Gene3D - 178 298 - -
Rops5g00137 304 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 28 291 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00137 Rops-Chr5 2227554 2232814 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00137 187 289 B3 DNA Binding Superfamily AT2G46530 33.981 5.20e-08 52.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Rops5g00137 AUX_IAA 8.7e-90 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00137 K14484 - gmx:100803754 501.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops5g00137 5 2227554 2232814 Rops5g00137 5 2227554 2232814 ECH
Rops2g00295 2 4598228 4601190 Rops5g00137 5 2227554 2232814 PCT