Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00130 ATGGAACGCATCATTGCCTCCAAGTACAAGCTCGGTCGCAAGATCGGTTGCGGATCCTTCGGTGAAATCTATCTCGCGACGCATATTGATACCTTCGAAATCGTCGCCGTCAAGATCGAGAATGGTAAAACGAAGCATCCGCAATTGCTTTATGAGGCCAAGCTCTACAATATTCTTCAAGGAGGAAGTGGCATCCCGAATGTAAAATGGTGTGGTGAAGACGGGGAGGACAATGTGCTTGTTATGGATTTGTTGGGGCCTAGTCTTGAGGATCTTTTTGTCTATTGTGGAAGAAAGTTCTCCCTCAAAACTGTATTGATGTTGGCCGATCAAATGATAACCAGAATAGAATATGTGCACTCTAAAGGATTCCTACATAGGGATATAAAACCTGATAATTTTCTCATGGGACTTGGTCGGAAGGCAAACCAGGTTTACACAATTGATTTTGGGCTAGCAAAACGATATCGGGACTCCACAACCAATCGCCACATCCCTTACAGGGAGAACAAAAACTTAACAGGGACTGCACGTTATGCAAGTTGCAATACTCATCTTGGGATTGAGCAAAGCCGTCGGGATGATTTGGAGTCACTAGGATATGTGCTTCTGTACTTCCTCAGAGGAAGCCTTCCTTGGCAAAACCTAAAGGCTGCTACAAAGAAGGAAAAGTATGATAAAATATGTGAGAAGAAAGTATCAACTCCTTTTGAGGTAATATGCAAATCTCATCCTGTAGAATTTTCTTCATACTTTCATTACTGCCACTCTCTGACCTTTGATCAGCGACCTGATTATGGATTCTTGAAGCGCCTATTTCGGGAGCTACTTGATCGGGAAGGTTATGGATATGATTATATATTTGATTGGACTGTTTTAAAGTACCGGCAGGCACAAGCACAAAAGAATAGAGTCCAGCCTCGCATATCTCCAATTCCTGGAGCAAGCAACAAACATGCAATGCCCATGGATGTTGACCATCATCGAGGTATTAATGCTTATTCTGGGGATGTCTCAGCAGAGCACATTAAATCAGGAGATGCTACTGGTTCTGGTGGTAAAATTCGGTTAAAATCACCAGTGGGTAGAAATTTGGGTTCTAAAAATCCTCTTGACAAGAATATTTTTGGTGAAGCAATTATCCCCTCTACTTCATACACTCTTGCTAATAACTCAAGAAGGAACTCCTCGAACCCTGCCCTGTCCAGTGAAGCTGTGAATCCTGGAAGCAGTAAAACTGGCCCTTCAACCGTGAATCTGATCAAGAAGATTCCCTCCCTATATACATGCGCGAAGCTGAAAATTCATGATGTATTGCTTGCATCTCTTCCCTATGTTTTTGGTCAAGAATTTTCAAGTGATCTATCCATGGAGACAGCAAATGTGCTGCAAGGTAGCTCGAATTTGACGGTCAGCCAGGTTAATTTGTATGTCATTCTTGGGCTGAATGAGTTCATTCTGGTTTTATTTCAGTTAGTTCAAGGGTTTCTGTTTTCAACCTATATCATCTGA 1512 0.4226 MERIIASKYKLGRKIGCGSFGEIYLATHIDTFEIVAVKIENGKTKHPQLLYEAKLYNILQGGSGIPNVKWCGEDGEDNVLVMDLLGPSLEDLFVYCGRKFSLKTVLMLADQMITRIEYVHSKGFLHRDIKPDNFLMGLGRKANQVYTIDFGLAKRYRDSTTNRHIPYRENKNLTGTARYASCNTHLGIEQSRRDDLESLGYVLLYFLRGSLPWQNLKAATKKEKYDKICEKKVSTPFEVICKSHPVEFSSYFHYCHSLTFDQRPDYGFLKRLFRELLDREGYGYDYIFDWTVLKYRQAQAQKNRVQPRISPIPGASNKHAMPMDVDHHRGINAYSGDVSAEHIKSGDATGSGGKIRLKSPVGRNLGSKNPLDKNIFGEAIIPSTSYTLANNSRRNSSNPALSSEAVNPGSSKTGPSTVNLIKKIPSLYTCAKLKIHDVLLASLPYVFGQEFSSDLSMETANVLQGSSNLTVSQVNLYVILGLNEFILVLFQLVQGFLFSTYII* 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00130 503 MobiDBLite consensus disorder prediction 390 413 - -
Rops5g00130 503 ProSiteProfiles Protein kinase domain profile. 9 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops5g00130 503 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Rops5g00130 503 SUPERFAMILY Protein kinase-like (PK-like) 5 290 IPR011009 -
Rops5g00130 503 FunFam Casein kinase I isoform delta-like 1 342 - -
Rops5g00130 503 PANTHER CASEIN KINASE-RELATED 8 369 - -
Rops5g00130 503 Pfam Protein kinase domain 9 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops5g00130 503 SMART serkin_6 9 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops5g00130 503 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Rops5g00130 503 Gene3D Transferase(Phosphotransferase) domain 1 1 326 - -
Rops5g00130 503 MobiDBLite consensus disorder prediction 342 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00130 Rops-Chr5 2131816 2137223 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00130 5 213 EF-hand Containing Proteins AT4G23650 29.767 9.65e-15 74.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Rops5g00130 Pkinase 1.3e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00130 K08960 - gmx:100798768 738.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops5g00130 5 2131816 2137223 Rops5g00130 5 2131816 2137223 ECH
Rops2g00308 2 4707516 4712716 Rops5g00130 5 2131816 2137223 PCT