Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00126 ATGAATCAACTTGGTGTTAGCCTTTTGGTTCTCTCTATACTTTTCATCCATGTTAGAGCACAAACTTATGCACCTTCACATGATGCTGACTCCAATTTCCAACCAAGCCTTGCTGTTGTCATAGGAATCCTTGGTATCATGTTTTCACTAGCATTCATTCTTCTCATGTTTGCCAAATTATGTAAACACAGTGCTTCACTTGGCCCAGAAAATCAACCAACACTTACAAGATCAAGGTCTAGATCTTCAGGGATTGACAAGACTGTCATAGAATCACTCCCTTTCTTTAGATTTTCTTCCCTCAAAGGATCAAAGGAAGGGCTTGAATGTGCAGTATGCTTATCAAAGTTTGAAGATGTTGAAATTCTTAGGCTATTGCCTAAGTGCAAGCATGCTTTTCATATTGATTGCATAGACCACTGGCTTGAAAAACACTCAACTTGTCCAATTTGCAGGTACAAAGTCAACCCTGAGGACCAAACAATCTTCACATATTCAAACAGTTTAAGGCTTATGACAAACCATTCAGGGTTAGGTGAAGAGTCCAACATAGAGATTTTTGTCCAAAGAGAGGAAGAACAACATCATGGTTCATCAAGATTCAGTATTGGAAGCAGCTTTAGGAAAATTGGAAAGGGTATTGGTATTAAGGAAGAAGAATTGCCTATCCAAAAAGGAGCAGAGGAGAGTGATGGTAACCAAAAGGCCTATCATAATCACAATCATAGGATTACTATATCTGATGTTGTGTTCAAGCATAGGTGGAGCAACGTGAGCTCTTCAGACCTTATGTTTTTGAATTCAGAGATTCTTAATGCTACATCAAGTGAAAGATTCAACAACTTGGAATCAAATGCTGACATGATGCAAGCTAAAAGAGAAATAGTAGAAAATGAGCAAACTATGAACATCAAGGAAGAGATGGAGAGGAAGATTTCCTTTGAGAGCAAAGTTGGTGCACTAAACAAGATTAAGGATCCTTCTTTTACATCAGATTCATCAGGAAATTTCAGTCATGCACCAAAGTATGTGAATCCGGGTGAGAACAGATCAATGTCAGAAATAACAGCTGTTTCTAGATTTGGAAATTTAGACATGAAGAGAAGGGTCTTTGAAGATTCTCCTTTGCATGAAAACAACCTTAAAGAGGAAAGAATGAGGAAGCTTTGGTTTCCAATTGCAAGAAGAACAGCTCAATGGTTTGTGAATAGAGAAAGAAGATCTCCACAATCCCAGAATAAAAACCAGCCATTAGATGTATAA 1263 0.3785 MNQLGVSLLVLSILFIHVRAQTYAPSHDADSNFQPSLAVVIGILGIMFSLAFILLMFAKLCKHSASLGPENQPTLTRSRSRSSGIDKTVIESLPFFRFSSLKGSKEGLECAVCLSKFEDVEILRLLPKCKHAFHIDCIDHWLEKHSTCPICRYKVNPEDQTIFTYSNSLRLMTNHSGLGEESNIEIFVQREEEQHHGSSRFSIGSSFRKIGKGIGIKEEELPIQKGAEESDGNQKAYHNHNHRITISDVVFKHRWSNVSSSDLMFLNSEILNATSSERFNNLESNADMMQAKREIVENEQTMNIKEEMERKISFESKVGALNKIKDPSFTSDSSGNFSHAPKYVNPGENRSMSEITAVSRFGNLDMKRRVFEDSPLHENNLKEERMRKLWFPIARRTAQWFVNRERRSPQSQNKNQPLDV* 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00126 420 Pfam Ring finger domain 109 152 IPR001841 -
Rops5g00126 420 SUPERFAMILY RING/U-box 89 158 - -
Rops5g00126 420 Coils Coil 279 308 - -
Rops5g00126 420 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 24 406 - -
Rops5g00126 420 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 84 161 IPR013083 -
Rops5g00126 420 SMART ring_2 110 151 IPR001841 -
Rops5g00126 420 CDD RING-H2_EL5-like 109 152 - -
Rops5g00126 420 ProSiteProfiles Zinc finger RING-type profile. 110 152 IPR001841 -
Rops5g00126 420 FunFam RING-H2 finger protein ATL43 85 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00126 Rops-Chr5 2100890 2102519 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00126 6 420 C3H Transcription Factor Family AT4G28890 47.191 3.46e-110 329
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00126 K10664 - gmx:100803207 614.379
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops5g00126 5 2100890 2102519 Rops5g00126 5 2100890 2102519 ECH