Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00118 ATGGGTGAAGCATCAACACCAAGCTCACCCTCTTCTTGTTCATTATCACCACAAACACAAGCACCATTGAGTTCAAGTAAATTTGAAGAGAAGAAAGGGAACAACAAAAGAGGAAGAGAAAATAACAATTGCAACAATAGTAATAGTAAACACCCGGTTTATAGAGGGGTCCGAATGCGCACGTGGGGCAAATGGGTATCCGAAATCAGAGAGCCCCGAAAGAAGAACCGAATCTGGCTTGGAACCTTCGCCACCGCTGAGATGGCGGCGCGTGCACACGACGTTGCGGCGCTCACCATAAAGGGCTCATCAGCAATCCTTAACTTCCCCGAACTCGCAGGTTCTTTGCCCCGACCCGCTTCGAATTCGCCCCGAGATGTTCAGGCTGCTGCTGCAAAAGCTGCTTCAATGGAGGCCACCCCTTTGTCGCCGGCGCCATCTTCGTCGTCGGAGTCATCGACGCCGGAGGATCTGGGTGAGATAGTGGAGCTGCCACCACTTGGAACATGTTTCGAATCACCCGACCCGAATAGTGAGTTTGTGTTTTTTGACCCGGTTGATGGGTGGCCCTATTCTCACCCGTGGTATAACGGAATGTATGATAATGATGACATGATATCAATGCAAGATTCAGAGAGTATGGTTCTTTCATTGTGGCCTTGA 663 0.4992 MGEASTPSSPSSCSLSPQTQAPLSSSKFEEKKGNNKRGRENNNCNNSNSKHPVYRGVRMRTWGKWVSEIREPRKKNRIWLGTFATAEMAARAHDVAALTIKGSSAILNFPELAGSLPRPASNSPRDVQAAAAKAASMEATPLSPAPSSSSESSTPEDLGEIVELPPLGTCFESPDPNSEFVFFDPVDGWPYSHPWYNGMYDNDDMISMQDSESMVLSLWP* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00118 220 CDD AP2 54 112 IPR001471 GO:0003700|GO:0006355
Rops5g00118 220 MobiDBLite consensus disorder prediction 1 52 - -
Rops5g00118 220 SUPERFAMILY DNA-binding domain 53 111 IPR016177 GO:0003677
Rops5g00118 220 MobiDBLite consensus disorder prediction 117 158 - -
Rops5g00118 220 SMART rav1_2 53 116 IPR001471 GO:0003700|GO:0006355
Rops5g00118 220 ProSiteProfiles AP2/ERF domain profile. 53 110 IPR001471 GO:0003700|GO:0006355
Rops5g00118 220 FunFam Ethylene-responsive transcription factor 2 52 111 - -
Rops5g00118 220 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 32 167 - -
Rops5g00118 220 Gene3D AP2/ERF domain 53 111 IPR036955 GO:0003700|GO:0006355
Rops5g00118 220 MobiDBLite consensus disorder prediction 1 28 - -
Rops5g00118 220 PRINTS Ethylene responsive element binding protein signature 76 92 IPR001471 GO:0003700|GO:0006355
Rops5g00118 220 PRINTS Ethylene responsive element binding protein signature 54 65 IPR001471 GO:0003700|GO:0006355
Rops5g00118 220 MobiDBLite consensus disorder prediction 141 156 - -
Rops5g00118 220 Pfam AP2 domain 52 102 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00118 Rops-Chr5 1978237 1979411 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00118 26 202 AP2-EREBP Transcription Factor Family AT5G11590 55.838 2.43e-60 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Rops5g00118 AP2 7e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00118 K09286 - gmx:100804801 281.952
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops5g00118 5 1978237 1979411 Rops5g00118 5 1978237 1979411 ECH
Rops2g00321 2 4830248 4831609 Rops5g00118 5 1978237 1979411 PCT