Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00117 ATGTATGGAGCGAGGATTTTGTTCAATCCTGACATTCCAGAGGCAATTGAGTTCAGAAATGGAATTCCAAGTCAAATAGGTGATATGTCCCAGAGTTTTTCTGTGTTGCCTGAAAGCCAAGTTTATTCTATTGAAGATGAATTCCTGATTGCAACCCCTAGGAAATCCATTGAACAATTAAAAGATTGTAAAGAGAAGGGTGGATCTGTAGAGCATCCTGATGAGTTTGATCAATTCTTCATTGGGAAGTCATTCATTTTTAAGGTTCATGTCAAGTCCAGTGTTGCCAACCAGTATGAACCATCTTTCAAAGTTGCAAGGATGTGTGCTGATGATTCAATTATATCTAAATTTAAGGAGAATTGTCCTTTCTTTTCTGAGGCTGATGTTACAGCTGGTTTGTCCACAGTTTATATGTCTGTCAGTAATGAAACTCAAGATGTTCAGTCTGTTGTTGCAAAGGAATTCAACTCAGAACATAAGTTTTATGATTCAGATCGTTTTCGGATTGCGTCTCAGTTTTTGGTTGGAGATGATGAGCTTGCCTGTCAAGCTGAAACTGGAGTTCAGAATTTGAATGCTGGAAAGAGATACTTGGATTATTCGACTTCTGTTTTGGATGGTGATTGTTCTGCAACTAAGTTGAAGACTGTTAAGATCGTCAAGTATCAGAAGCACCGCTCAACATACTCCAATTTCAGGAATTTCTCTGAGGGTTTCGGGGTTCTGCCTACTGATTTCACTTCTGAATTTGGACATGTAATTGGTGGTTCTGCTTCCATATATGGTCCTTCTGGGCAAATATTTGTGATTTCCTTTACCGATGATGAGGATGGTGGGTTGCTAACAGTGGGATGGAATCATTTTGTCACTCGGTTAGCGTTGGTGCGCAAGCCCAAAGTTATATTGGAATATCTTGGAGAATCCTTTTTCGTTTTTAAACAAGCTAATCAACTTCCTGGGAATTCTGGTCGAATTGGTTTGTCTAATTATGTAAATCCTTCCTCTGAGAACCTAAAACAAGTCAAGATTTCCAATTATTCATTGGCTTTTGATAGACAGAACCTGCCTGCTAGATTAGTCAATGACCATATCAACTTAAGGAATTCGACCATCACCATGAAGGCAATAGATGGCACTGAATACAAATGTCCTCTTTACAACAACAGCAGAAAAAAAAATTATGCCAGAATTTCAAATGGATGGGCGGCGATGTGTGCTGATCTGGACTTGAAGGCAGGGGATCGTGTTTTATTTCAGCCAGTTGATTCTGAAAAAAATTTATTCCAAATTTTTGTTAATGTTGATTGTCCTTAG 1317 0.3857 MYGARILFNPDIPEAIEFRNGIPSQIGDMSQSFSVLPESQVYSIEDEFLIATPRKSIEQLKDCKEKGGSVEHPDEFDQFFIGKSFIFKVHVKSSVANQYEPSFKVARMCADDSIISKFKENCPFFSEADVTAGLSTVYMSVSNETQDVQSVVAKEFNSEHKFYDSDRFRIASQFLVGDDELACQAETGVQNLNAGKRYLDYSTSVLDGDCSATKLKTVKIVKYQKHRSTYSNFRNFSEGFGVLPTDFTSEFGHVIGGSASIYGPSGQIFVISFTDDEDGGLLTVGWNHFVTRLALVRKPKVILEYLGESFFVFKQANQLPGNSGRIGLSNYVNPSSENLKQVKISNYSLAFDRQNLPARLVNDHINLRNSTITMKAIDGTEYKCPLYNNSRKKNYARISNGWAAMCADLDLKAGDRVLFQPVDSEKNLFQIFVNVDCP* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00117 438 Gene3D - 331 435 IPR015300 -
Rops5g00117 438 Pfam B3 DNA binding domain 343 432 IPR003340 GO:0003677
Rops5g00117 438 ProSiteProfiles B3 DNA-binding domain profile. 339 435 IPR003340 GO:0003677
Rops5g00117 438 CDD B3_DNA 340 432 IPR003340 GO:0003677
Rops5g00117 438 SUPERFAMILY DNA-binding pseudobarrel domain 237 313 IPR015300 -
Rops5g00117 438 SUPERFAMILY DNA-binding pseudobarrel domain 340 432 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00117 Rops-Chr5 1954764 1958816 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Rops5g00117 B3 9.6e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00117 - K17947 aof:109832011 90.1225