Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00101 ATGAGAAAACAAGAGGGAGCTTCTTCCATAACCATCATTTTGAGATATGCTGATTGGATTGATATTCTGCTAATGTTAATGGGTGCTTTGGGAGCAATTGGAGATGGCATGGCCACAAATGTTTTGCTACTGTTTGCTAGCCGTATCATGAACAGCTTAGGTTCAAGTAATAACCAACAACAACAACATAGTGGAACTTCAATGACTGAGGTTGAAAAGTGCAGCTTATATTTTGTCTACTTGGGATTAGCAGCTATGGTGGTGTCTTTCATGGAAGGGTATTGTTGGAGCAAAACAAGTGAGAGACAAGTGTTGAGAATTCGTTACAAGTATTTGGAAGCTGTTCTTAGACAAGAAGTGGGGTTTTTTGATTCACAAGAAGCAACTACTTCTGAAATCATTAACAGCATATCAAAGGACACTTCTCTTATACAAGAAGTTCTAAGTGAAAAGGTACCCTTATTTTTCATGCACTCATCATCATTCATCTCTGGGGTTGCTTTTGCCACGTACTTCTCTTGGAGGTTGGCTTTAGTGGCATTCCCAACACTGCTTTTTCTTATTATCCCTGGCATGATTTATGGTAAATACCTCATCTATTTGTCAAAATCATCCTTCAAAGAGTACGGCAAAGCAAATGCTATAGTAGAACAGGCACTGAGCTCTATCAAAACTGTTTATTCATTCACTGCGGAGAAGAGAATCATTGGGAGATATTCAATCATATTAGATAGAACTTCAAGGTTGGGAATCAAACAAGGCATAGCTAAGGGTCTTGCTGTTGGAAGCACAGGTCTCTCTTTTGCAATATGGGCTTTTCTTGCTTGGTATGGAAGCCATTTGGTTATGTACAAAGGTGAAAGTGGAGGAAGGATCTATGCAGCAGGCATTTGCTTCATAATGAGTGGACAATCCCTTGGGGTAGTACTTCCTGATTTGAAGTACTTCATAGAAGTATCTGTTGCTGCTTCAAGAATATTTCATATGATTGATAGAATACCAGCAATTGATGGTGAAGACACAAAAGGAATTGTATTAGAGAACATTAGTGGCAAGCTAGATTTTGAGCATGTGAAATTCACATACCCTTCTCGTCCGGATATGGTTGTACTAAATGATTTCGATCTCCAAGTGGGAGCAGGGAAAACTATTGCTCTAGTTGGTGCAAGTGGAAGTGGTAAGTCCACTGCAATAGCATTAGTACAAAGATTTTATGATGCAGATGAAGGTGTTGTGAGGGTTGATGATGTCGACATAAAAAGGCTACAATTGAAATGGATAAGAGGGAAAATGGGACTTGTAAGTCAAGAACATGCAATGTTTGGGACATCCATAAAGGAGAATATTATGTTTGGGAAGCCTGATGCTACCATGGATGAAATTGTTGCTGCAGCCACAGCAGCCAATGCTCATAACTTCATAAGACAGCTTCCTGAAGGCTATGAAACCAAGATTGGAGAAAGGGGGGCACTTCTTTCAGGAGGACAAAAGCAACGAATAGCCATTGCAAGAGCCATCATAAAAAATCCAGTAATTCTCCTACTTGATGAAGCAACTAGTGCTCTTGACTCTGAATCAGAATTACTGGTTCAGAATGCCCTTGATCAGGCCTCAATGGGGAGGACTACATTGGTTGTTGCCCACAAGCTATCAACTATTAGAAATGCAGACCTCATAGCAGTTGTCAGTGGTGGTTGCATCATTGAAACTGGAACTCACAATGAACTCATCACCCATCCAAATGGCCACTATGCAAAACTGGCAAAAATGCAGACACAATTGAGCATGGATGACCCAGATCAAAATCAAGAACTAGGTGTTCTTTCTGCAGCAAGAAGCAGTGCAGGACCAAGCACTGCCAGGTCAAGCCCTGCCATCTTTCCAAAGTCACCATTGCCTGATGATACCACCCTATCTCCTGTGTCTCATCCTCCACCTTCTTTTCCAAGGCTTCTTTCTTTGAATGCTCCTGAATGGAAACAAGGTCTAATTGGAACACTCTCAGCTATTACCTTTGGCTCAGTTCAACCTATATATGCTCTAACCATTGGGGGCATGATTTCTGCATTTTTTGCTGAAAGCCATCAGGAAATGAGACACAGAATCAGGACTTATTCTTTAATTTTCTCTTCTCTATCCCTTGCTTCTATTATCCTCAATCTCTTGCAACACTACAATTTTGCCTATATGGGAGCCAAGTTAACCAAAAGGATAAGATTGAGAATGATGGAGAAGATCTTAACCTTTGAAACTGCATGGTTTGATGAGGAAAAAAACTCCAGTGGAGCATTATGTTCAAGGTTGAGCAATGAGGCTTCCATGGTAAAGTCCCTTGTTGCAGACCGACTCTCTTTACTAGTTCAAACCACTTCAGCTGTCACCATTGCAATGATCATAGGCCTTGCAGTGGCTTGGAAGCTTGCTCTTGTTATGATAGCAGTGCAGCCACTTACAATCCTTTGCTTTTATACAAGAAAAGTGTTGCTCTCTACACTTTCAACCAAATTTGTTAAGGCACAGAATCAAAGCACACAAATTGCAGTGGAAGCAGTTATTAATCACAGAATTGTAACTTCATTTGGAAGCATCACAAAAGTTCTAAGACTATTTGATGAGGCTCAAGAGGCACCAAGGAAGGAAGCAAGGAAGAAGTCTTGGCTAGCCGGCATTGGAATGGGTTCTGCTCAGTGCCTAACATTCATGTCATGGGCTTTGGATTTCTGGTATGGTGGTACTTTGGTTGATAAGGGAGAGATATCATCTGGAGATGTGTTCAAAACATTTTTTGTGTTGGTAAGCACTGGAAAAGTCATAGCTGATGCTGGAAGCATGACTTCTGACCTTGCCAAGAGCTCAACAGCAGTGGCATCTGTATTTGAAATTCTTGATCGCCAATCACTAATTCCCAAGGCTGGAGATAGCACAAATGGCATTAAGTTGGGAAAGATGAGTGGAAAGATAGAGTTGAAGAATGTTGATTTTGCTTATACAAGCAGGTCCAAGACCCCAATTTTGCGCAAGTTTTGCTTGGAGGTGAAGCCAGGAAAAAGTGTTGGACTGGTTGGGAAAAGTGGATGTGGAAAATCAACAGTGATTGCCTTAATCCAAAGATTCTATGATGTTGACAAAGGATCAGTTAAAGTGGATAATGTGGACATAAGGGAATTAGACATTCACTGGTACAGGCAACACACAGCACTTGTTAGCCAAGAACCTGTGATATATTCTGGCAGCATACGTGACAACATTTTGTTTGGGAAGCAAGATGCAACAGAGAATGAAGTGGTTGAGGCTGCAAGAGCTGCTAATGCTCATGAGTTCATATCATCACTGAAAGATGGATATGAAACTGAATGTGGAGAAAGGGGAGTACAGTTGTCAGGAGGGCAAAAGCAGAGAATAGCAATTGCAAGGGCCATAATTAGGAACCCAACAATACTACTGCTAGATGAGGCAACAAGTGCCTTGGATGTGCAATCAGAACAAGTTGTGCAAGAAGCACTTGATAGGATTATGGTAGGAAGAACTACCATTGTTGTGGCACATAGGCTTAACACCATCAAAGAGCTTGACTCAATTGCCTATGTGTCAGAGGGTAAGGTTCTTGAGCAAGGAACCTATGCTCAACTAAGGCACAAGAGAGGTGCTTTCTTCAACCTTGCCTGCCATCAAATACAAACTTAG 3684 0.4126 MRKQEGASSITIILRYADWIDILLMLMGALGAIGDGMATNVLLLFASRIMNSLGSSNNQQQQHSGTSMTEVEKCSLYFVYLGLAAMVVSFMEGYCWSKTSERQVLRIRYKYLEAVLRQEVGFFDSQEATTSEIINSISKDTSLIQEVLSEKVPLFFMHSSSFISGVAFATYFSWRLALVAFPTLLFLIIPGMIYGKYLIYLSKSSFKEYGKANAIVEQALSSIKTVYSFTAEKRIIGRYSIILDRTSRLGIKQGIAKGLAVGSTGLSFAIWAFLAWYGSHLVMYKGESGGRIYAAGICFIMSGQSLGVVLPDLKYFIEVSVAASRIFHMIDRIPAIDGEDTKGIVLENISGKLDFEHVKFTYPSRPDMVVLNDFDLQVGAGKTIALVGASGSGKSTAIALVQRFYDADEGVVRVDDVDIKRLQLKWIRGKMGLVSQEHAMFGTSIKENIMFGKPDATMDEIVAAATAANAHNFIRQLPEGYETKIGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESELLVQNALDQASMGRTTLVVAHKLSTIRNADLIAVVSGGCIIETGTHNELITHPNGHYAKLAKMQTQLSMDDPDQNQELGVLSAARSSAGPSTARSSPAIFPKSPLPDDTTLSPVSHPPPSFPRLLSLNAPEWKQGLIGTLSAITFGSVQPIYALTIGGMISAFFAESHQEMRHRIRTYSLIFSSLSLASIILNLLQHYNFAYMGAKLTKRIRLRMMEKILTFETAWFDEEKNSSGALCSRLSNEASMVKSLVADRLSLLVQTTSAVTIAMIIGLAVAWKLALVMIAVQPLTILCFYTRKVLLSTLSTKFVKAQNQSTQIAVEAVINHRIVTSFGSITKVLRLFDEAQEAPRKEARKKSWLAGIGMGSAQCLTFMSWALDFWYGGTLVDKGEISSGDVFKTFFVLVSTGKVIADAGSMTSDLAKSSTAVASVFEILDRQSLIPKAGDSTNGIKLGKMSGKIELKNVDFAYTSRSKTPILRKFCLEVKPGKSVGLVGKSGCGKSTVIALIQRFYDVDKGSVKVDNVDIRELDIHWYRQHTALVSQEPVIYSGSIRDNILFGKQDATENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQKQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMVGRTTIVVAHRLNTIKELDSIAYVSEGKVLEQGTYAQLRHKRGAFFNLACHQIQT* 1228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00101 1227 MobiDBLite consensus disorder prediction 610 625 - -
Rops5g00101 1227 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 26 318 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops5g00101 1227 CDD ABC_6TM_Pgp_ABCB1_D1_like 25 326 - -
Rops5g00101 1227 SUPERFAMILY ABC transporter transmembrane region 646 963 IPR036640 GO:0005524|GO:0016020
Rops5g00101 1227 SMART AAA_5 1014 1206 IPR003593 GO:0016887
Rops5g00101 1227 SMART AAA_5 380 572 IPR003593 GO:0016887
Rops5g00101 1227 FunFam ABC multidrug transporter SitT 977 1225 - -
Rops5g00101 1227 FunFam ABC transporter B family member 4 343 599 - -
Rops5g00101 1227 FunFam Putative ABC transporter B family member 8 630 972 - -
Rops5g00101 1227 Pfam ABC transporter 1008 1154 IPR003439 GO:0005524
Rops5g00101 1227 CDD ABC_MTABC3_MDL1_MDL2 354 591 - -
Rops5g00101 1227 PANTHER ABC TRANSPORTER B FAMILY 7 675 IPR039421 -
Rops5g00101 1227 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 343 591 IPR027417 -
Rops5g00101 1227 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 987 1223 IPR003439 GO:0005524
Rops5g00101 1227 Pfam ABC transporter 371 520 IPR003439 GO:0005524
Rops5g00101 1227 CDD ABC_6TM_Pgp_ABCB1_D2_like 652 968 - -
Rops5g00101 1227 ProSitePatterns ABC transporters family signature. 1126 1140 IPR017871 GO:0005524|GO:0016887
Rops5g00101 1227 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 663 950 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops5g00101 1227 Gene3D - 977 1227 IPR027417 -
Rops5g00101 1227 FunFam ABC transporter B family member 1 12 350 - -
Rops5g00101 1227 Pfam ABC transporter transmembrane region 26 285 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops5g00101 1227 Pfam ABC transporter transmembrane region 664 933 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops5g00101 1227 Gene3D ABC transporter type 1, transmembrane domain 13 893 IPR036640 GO:0005524|GO:0016020
Rops5g00101 1227 SUPERFAMILY ABC transporter transmembrane region 14 337 IPR036640 GO:0005524|GO:0016020
Rops5g00101 1227 ProSitePatterns ABC transporters family signature. 492 506 IPR017871 GO:0005524|GO:0016887
Rops5g00101 1227 Gene3D - 343 592 IPR027417 -
Rops5g00101 1227 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 353 589 IPR003439 GO:0005524
Rops5g00101 1227 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 978 1224 IPR027417 -
Rops5g00101 1227 MobiDBLite consensus disorder prediction 610 644 - -
Rops5g00101 1227 CDD ABC_MTABC3_MDL1_MDL2 987 1221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00101 Rops-Chr5 1643029 1651598 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00101 30 591 Calmodulin-binding Proteins AT2G36910 35.221 2.02e-101 349
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00101 K05658 - gmx:100801088 2103.95