Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00094 ATGACAATATTAGCCACATCCCATGTTAAATTACTATGTTACTCTCTTCTGACCTTCTTTCTTATGCTGAGCCATGCAGACTGTGTGTCTCAGCTGCATGATCAAGAACATGCAATCCTATTGAAGATAAAGCTGCACCTACAGAACCCACCATTCCTCAGTCACTGGACCCCATCAAACTCTTCACATTGCTCTTGGCCAGAGATAACATGCACCAATGGTTATGTCACTGGATTGACTTTGGTCAACTCCAACATCACTCAAACTATACCACCTTTCATATGTGACCTCAAAAATCTCATACATGTTGATTTCCACCAGAATTTCATTCCTGGGGAGTTCCCAACATATCTCTTCAAGTGTTCCAAGTTGGAGTACCTCGACCTTTCAATGAACAACTTTGATGGTAAGATTCCAGATGACATTGATAGCTTGGTTAACTTGAGGCATCTTAACCTTGGTTCCACAAACTTCAATGGTGACATTCCTATGAGTATTGGAAGCTTGAAGGAATTGAGGCTACTTCAACTTCAATATTGTTTATTTAATGGTACTTTCCCTGATGAGGTTGGCAATTTGTTCAATCTTGAATTCTTGGATGTGTCCTCTAACTTTGAGTTCCCTCCTTGGAAGATCCCATCAAGTTTAACCAAGTTGAAGAAATTGAACTTTTTGCATATGTATGGTTCAAACTTGATAGGTGAAATCCCTGAAGACATTGGAGAATTGGTGGCATTGGAGGACTTGAATATATCTAACAACAGTTTAACTGGACACATTCCTAGAGGTTTGTTCATGCTGAAGAATCTGAGCATACTGTACCTCCATGAAAACAAACTTTCTGGGGAGATACCAAGTGTGGTTGAAGCATTAAATTTGACCCAGATAGATCTTGCAGAGAACAATCTTACAGGGAAAATACCAGATGATTTTGGAAAGCTTCAAAACTTAACAGGGTTGAGTTTGTCTATGAATAAATTGTCAGGGGAGATACCAAAAAGCATTGGTCTTCTTCCATCTCTGATAGATTTTCGTGTCTTTATGAACAATTTGTCAGGTACTCTTCCACCTGACTTTGGCCGCTACTCAAAGCTTGAAACCTTTCATATTGCATCTAACAGTCTCAGGGGAATGCTACCAGAGAACTTATGTTATCATGGTGAGTTTCGTAATTTAACTGTTTATGAAAATTATCTGATTGGGGAGTTGCCAAAATCACTAGGAAATTGCAGCACCCTTCAGGATCTTAAAATTTACAGTAATGAGTTTTCTGGCAAGATTCCAAGTGGTCTTTGGACTTCCTCCAATTTGGTGAATTTCATGGTAAGCCATAATAAGTTCATTGGTGAGCTTCCTGAAAGATTGTCTTCTAGTATTTCACTCTTTAATATAAGTTACAATCAGTTTTATGGTAGAATTCCTGCTGGAGTATCTTCCTGGACCAATGTGGTAGTGTTTGATGCCAGTAAGAACTACTTTAATGGAAGTATTCCACAAGGGCTAACGGCTTTTACCAAGTTAACAAAACTGTTGCTTGATCAAAACCAGCTCACAGGGCCACTTCCATCAGATATAACATCATGGAAGTCCCTAGTGACTCTAAATTTGAGCCAAAATCAACTCTCTGGACAAATCCCAGATGCAATTGGCCGGTTACCTGTCCTTAGTGAGCTTTACCTGTCAGAAAATCAATTCTCTGGCCAAATTCCTTCCATACTTCCCAGACTCACCAATCTCAATCTATCCTCCAATCTTTTGACTGGGAGGATTCCAAGTGACTTTGAAAATTCTGCATTTTCCAGCAGCTTTTTGAACAATTCTGGTCTTTGTGCTGATACCCCAGTATTGAACCTTACTTCTTGCAAATCCAGCTTTGAAATGCCATCCAAAGGCTCATCTTGGTCTCTTACTTTGATTATTTGCCTTGTGGTATTAGCCTTCTTGCTGGCTTTGTCAATATCACTCTTGATTATCAAACTTTATAGTAAAAAAAAGCAAGGATTGGACACCTCATGGAAGCTTATTTCCTTTCAAAGGTTGAGTTTCACAGAATCAAACATATTGTCCTCAATGACTGAACATAATATCATTGGCAGTGGTGGATTTGGTACAGTATACCGTGTTCCTGTTGATGGTTTAGGCCATGTTGCTGTGAAAAAGATCTCAAATAACAGAAAGTTAAGCCAAAAGCTTGAGAGCTCATTTCGTGCAGAAGTTAAAATATTGAGCAATATTCGTCATAACAACATTGTGAAATTGTTGTGCTGTATCTCTAATGAGGATTCAATGCTCCTTGTGTATGAGTATCTTGAAAACCATAGCTTAGATAGGTGGCTGCACAACGAGAACAAGTCATCTCATGTTGTCCTTGATTGGCCAAAGAGATTGCAAATAGCCATCGGGGTTGCTCATGGTTTGTGCTACATGCACCATGATTGCTCACCACCAATTGTTCATAGAGATATAAAAACAAGTAACATCCTCTTGGATGCTCAATTCAATGCAAAAGTTGCTGATTTTGGTCTTGCTAGGATGTTAATGAAGCCAGGACAATTCAACACCATGTCAGCTGTGATTGGCTCATTTGGCTATATGGCTCCAGAATATGTTCAAACAGCTAGAGTCACTGAAAAGATTGATGTGTTTAGCTTTGGGGTGATCCTATTGGAACTGACAACTGGTAAAGAAGCTAATTATGGTGATGAGCACTCATCTCTTGCAGAGTGGGCTTGGCGCCACATGAATGTAGGAAGCAATATAGAAGAGCTGCTAGATAGTGATTTCATGGAACCAAATCACTTGGATGAAATGCGCAGTGTTTTCAAACTTGGGTTCATGTGTACTGCAACACTTCCTTCTAGTAGACCTTCCATGAAGGAGGTACTGCACTTATTGCTCCGATGTGGAGAAGGATTCACATTTGGAGAGAGGAATGTTGGTTCCTATGATGCTGTTCCACTTCTTAAGAATTCAAAATGGGAGAGTAAGTTGGATGTTGTTGATAATGATAGTGACTAA 3018 0.3946 MTILATSHVKLLCYSLLTFFLMLSHADCVSQLHDQEHAILLKIKLHLQNPPFLSHWTPSNSSHCSWPEITCTNGYVTGLTLVNSNITQTIPPFICDLKNLIHVDFHQNFIPGEFPTYLFKCSKLEYLDLSMNNFDGKIPDDIDSLVNLRHLNLGSTNFNGDIPMSIGSLKELRLLQLQYCLFNGTFPDEVGNLFNLEFLDVSSNFEFPPWKIPSSLTKLKKLNFLHMYGSNLIGEIPEDIGELVALEDLNISNNSLTGHIPRGLFMLKNLSILYLHENKLSGEIPSVVEALNLTQIDLAENNLTGKIPDDFGKLQNLTGLSLSMNKLSGEIPKSIGLLPSLIDFRVFMNNLSGTLPPDFGRYSKLETFHIASNSLRGMLPENLCYHGEFRNLTVYENYLIGELPKSLGNCSTLQDLKIYSNEFSGKIPSGLWTSSNLVNFMVSHNKFIGELPERLSSSISLFNISYNQFYGRIPAGVSSWTNVVVFDASKNYFNGSIPQGLTAFTKLTKLLLDQNQLTGPLPSDITSWKSLVTLNLSQNQLSGQIPDAIGRLPVLSELYLSENQFSGQIPSILPRLTNLNLSSNLLTGRIPSDFENSAFSSSFLNNSGLCADTPVLNLTSCKSSFEMPSKGSSWSLTLIICLVVLAFLLALSISLLIIKLYSKKKQGLDTSWKLISFQRLSFTESNILSSMTEHNIIGSGGFGTVYRVPVDGLGHVAVKKISNNRKLSQKLESSFRAEVKILSNIRHNNIVKLLCCISNEDSMLLVYEYLENHSLDRWLHNENKSSHVVLDWPKRLQIAIGVAHGLCYMHHDCSPPIVHRDIKTSNILLDAQFNAKVADFGLARMLMKPGQFNTMSAVIGSFGYMAPEYVQTARVTEKIDVFSFGVILLELTTGKEANYGDEHSSLAEWAWRHMNVGSNIEELLDSDFMEPNHLDEMRSVFKLGFMCTATLPSSRPSMKEVLHLLLRCGEGFTFGERNVGSYDAVPLLKNSKWESKLDVVDNDSD* 1006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00094 1005 SUPERFAMILY RNI-like 71 352 - -
Rops5g00094 1005 ProSitePatterns Serine/Threonine protein kinases active-site signature. 817 829 IPR008271 GO:0004672|GO:0006468
Rops5g00094 1005 ProSiteProfiles Protein kinase domain profile. 691 966 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops5g00094 1005 PANTHER UNNAMED PRODUCT 211 897 - -
Rops5g00094 1005 FunFam Kinase family with leucine-rich repeat domain-containing protein 673 769 - -
Rops5g00094 1005 SMART serkin_6 691 966 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops5g00094 1005 Gene3D Transferase(Phosphotransferase) domain 1 770 972 - -
Rops5g00094 1005 Gene3D Phosphorylase Kinase; domain 1 668 769 - -
Rops5g00094 1005 FunFam Putative leucine-rich repeat receptor-like protein kinase family protein 189 289 - -
Rops5g00094 1005 FunFam Kinase family with leucine-rich repeat domain-containing protein 770 981 - -
Rops5g00094 1005 Gene3D Ribonuclease Inhibitor 290 386 IPR032675 -
Rops5g00094 1005 Gene3D Ribonuclease Inhibitor 33 186 IPR032675 -
Rops5g00094 1005 Pfam Leucine rich repeat 506 565 IPR001611 GO:0005515
Rops5g00094 1005 SUPERFAMILY Protein kinase-like (PK-like) 683 965 IPR011009 -
Rops5g00094 1005 Pfam Leucine Rich Repeat 123 145 IPR001611 GO:0005515
Rops5g00094 1005 FunFam Receptor-like protein kinase HSL1 isoform A 297 621 - -
Rops5g00094 1005 Gene3D Ribonuclease Inhibitor 187 289 IPR032675 -
Rops5g00094 1005 FunFam Receptor-like protein kinase HSL1 isoform A 33 184 - -
Rops5g00094 1005 Pfam Leucine rich repeat N-terminal domain 34 71 IPR013210 -
Rops5g00094 1005 SUPERFAMILY RNI-like 292 596 - -
Rops5g00094 1005 Gene3D Ribonuclease Inhibitor 459 527 IPR032675 -
Rops5g00094 1005 Gene3D Ribonuclease Inhibitor 387 458 IPR032675 -
Rops5g00094 1005 Gene3D Ribonuclease Inhibitor 528 613 IPR032675 -
Rops5g00094 1005 Pfam Protein kinase domain 693 963 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops5g00094 1005 ProSitePatterns Protein kinases ATP-binding region signature. 697 720 IPR017441 GO:0005524
Rops5g00094 1005 SMART LRR_typ_2 504 528 IPR003591 -
Rops5g00094 1005 SMART LRR_typ_2 97 121 IPR003591 -
Rops5g00094 1005 SMART LRR_typ_2 243 267 IPR003591 -
Rops5g00094 1005 SMART LRR_typ_2 573 596 IPR003591 -
Rops5g00094 1005 SMART LRR_typ_2 314 338 IPR003591 -
Rops5g00094 1005 SMART LRR_typ_2 529 552 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00094 Rops-Chr5 1562174 1566058 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00094 30 1003 Receptor kinase-like Gene Family AT5G25930 50.051 0.0 927
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Rops5g00094 Pkinase 2.3e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00094 - - gmx:100819744 1481.85