Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00087 ATGAAAATACTAAGACTTTCATGTGTTAAATTTCTATTCCACTCTCTTCTTACCTTATTCCTCATCCTAAGCCATGCAAACTCTCAGTCTCAGTCTCAGCTGCATGATCAAGAACATGCAGTCCTAATGAAGATAAAGCAATACCTTGATAATCCTCCATTGCTCAATCACTGGACCTCAAACTCCTCTCACTGTTCTTGGCCAGAGATCACTTGCACCAGTGGTTCTGTCACTGGACTAGCTTTGGTTGAAATCAACATCAATCAAACTATACCACCTTTCATATGTGAGCTCAAAAACCTTACACATGTTGATTTCAACAACAATTTCATTCCTGGGGAGTTCCCAACATATCTCTACAACTGTTCCAAGTTGGAGTATCTAGACCTTTCAATGAACAACTTTGTTGGTGAGATTCCTAATGACATTCATCATTTGTCTAATTTGAAGAATCTTAACCTCAGTTACACCAACTTCTCTGGTGACATTCCTGCTAGTATTGGAAGGCTAAAGGAACTGAGATATCTTGCACTTCAATATTGTCTATTTAATGGAACCTTCCCTGATGAGATTGGCAACTTGTTTAATCTTGAAACCTTGGATTTGTCCTCAAACAGTTTGTTCCTTCCTTCAAGGTTACCCAAGAATTGGACCCAGTTGAAAAAATTGAAAGTCTTTCAAATGTTTGAATGCAACTTAGTTGGGGAAATTCCAGAAACCATTGGACAAATGGTTGCCTTGGAGAAATTGGATGTATCAAAGAATGCTTTAACTGGAAACATTCCAAGTGGTGTGTTCATGCTGAAGAATCTGAGCATACTGTTTCTTCACAGAAACAGTCTTTCTGGGGAGATACCAAGTGTGGTTGAAGCATTAAATTTGACCATCATTGATTTTACAAGGAATAATCTTTCAGGGAAAATACCAGAAGATTTTGGAAAGCTCCAAAAGTTGACAGGCTTGGCTTTGTATATGAATAACTTGTCAGGAGAGATACCACAAAGCATAGGTAGTCTTCCATCTCTGATAGATTTTCGTGTCTTTATGAACAACTTGTCAGGTACTCTTCCTCCTGATTTTGGCCGCTACTCAAAGCTTGAAACCTTTCTGATTTCAACAAACAGTTTTAAGGGAAGGTTACCAGAGAACTTATGTTATCATGGTGAGTTGCTTAATTTAACTGTTTATGAAAATTATCTGATTGGGGAGTTGCCAAAATCACTAGGAAATTGCAGCACCCTGCAGGATCTTAAAATTTACAGTAATGAGTTTTCTGGCAAGATTCCAAGTGGTCTTTGGACTTTGAATTTGGCAAATTTCATGGTAAGCCATAATAAGTTCACTGGTGAGCTTCCTCAAAGATTGTCTTCCAGTATTTCTCGCTTTGAGATAAGTTACAATCAGTTTTATGGTAGAATTCCTACCGCGGTATCTTCATGGACTAATGTGGTAGTGTTTGATGCAAGTAAGAACTTCTTTAATGGAAGTATTCCACAAGGGATAACGGCTCTTCCCAAGTTAACAAAACTGTTGCTTGATCAGAACCAGCTCACAGGGCCACTTCCATCAGATATAATATCATGGAAGTTCCTAGTGACTCTAAATTTGAGCCAAAATCAACTCTCCGGACAAATGCCAGATGCAATTGGCCGGTTACCTGTCCTTAGTGAGCTTGACCTGTCAGAAAATCAATTCTCTGGCCAAATTCCTTCCATACTTCCCAGACTCACCAATCTCAATCTATCCTCCAATCTTTTGACTGGGAGGATTCCAAGTGAATTTGAAAATTCAGCATTTTCCAGCAGCTTTTTGAACAATTCTGGTCTTTGTGCTGATACCCCAGTATTGAACCTTACCTTGTGTAATTCTGGCCCTCAAAGGGAAAGCAAGGACTCGTCTTGGTCTCCTGCTTTGATTATAAGCCTGGTGGTAGTGTTCCTCTTTGTGGCTTTGTTGGCATCATTCTTGATTATTAGACTTTACAGAAAAAGAAAGCAAGGATTGGATAACTCATGGAAGCTCATTTCCTTTCAAAGGAGGTTGAGTTTCACTGAATTAAACATAGTATCCTCAATGACAGAACAAAATATTATTGGCAAGGGTGGATATGGTACAGTGTACCGTGTTGCTGTTGATGGTATAGGCTATGTTGCTGTGAAGAAGATTTGGGAAAACAAAAAATTAGACCATAATCTTGAGAGTTCATTCCATACTGAAGTTAAAATATTGAGCAGCATTCGTCATAGAAACATTGTGAAGTTGTTGTGTAGTATCTCTAATGAGGATACCATGATCCTTGTCTATGAGTATGTGGAAAACCGTAGCCTTGATAGGTGGCTGAACAAGAAGAGTAAGTCATCAGCTGTGTCAGGTTTGGGCCATCATGTTGTCCTTGATTGGCCAAAGAGATTGCAAATAGCCATTGGGGTTGCCCAAGGTTTGAGCTACATGCACCATGAATGCTCACCACCTGTTGTTCATAGAGATGTGAAAACAAGCAACATCCTTTTGGATGGTCAATTCAATGCAAAAGTTGCTGATTTTGGCCTGGCTAGGATGCTGATCAAGCCAGGGGAACTTGCCACCATGTCAACTGTGATTGGCTCATTTGGCTATATAGCTCCAGAATATGTTCAAACAACTAGAGTCAATGAAAAGATTGATGTGTTTAGCTTTGGGGTTATCCTATTGGAGCTGACAACTAGTAAAGAAGCTAATTATGGAGATGAACACTCATCTCTTGCACAATGGGCAAGGCGTCACCACCAGATAGGAAGCAATATTGAAGAATTACTAGACAAAGAAGTCATGGAATCAAGTTACTCGGATGGAATGTGCAAGGTTTTCAAACTTGGGGTCATGTGTACTGAAGTACTTCCTGCTAGTAGACCTTCCATGAAGGAGGTCCTCCAAGTATTGCTCCATTGTGGAGAATCATTTGCCTTTGGAGAGAGGCATATTGGCTATTATGAAGATGTTCCCCTCCTTAGAAATTCAAAAAGAGAGTCCAAGTTGGATGTTGAGAATGATAGCTAG 3036 0.3962 MKILRLSCVKFLFHSLLTLFLILSHANSQSQSQLHDQEHAVLMKIKQYLDNPPLLNHWTSNSSHCSWPEITCTSGSVTGLALVEININQTIPPFICELKNLTHVDFNNNFIPGEFPTYLYNCSKLEYLDLSMNNFVGEIPNDIHHLSNLKNLNLSYTNFSGDIPASIGRLKELRYLALQYCLFNGTFPDEIGNLFNLETLDLSSNSLFLPSRLPKNWTQLKKLKVFQMFECNLVGEIPETIGQMVALEKLDVSKNALTGNIPSGVFMLKNLSILFLHRNSLSGEIPSVVEALNLTIIDFTRNNLSGKIPEDFGKLQKLTGLALYMNNLSGEIPQSIGSLPSLIDFRVFMNNLSGTLPPDFGRYSKLETFLISTNSFKGRLPENLCYHGELLNLTVYENYLIGELPKSLGNCSTLQDLKIYSNEFSGKIPSGLWTLNLANFMVSHNKFTGELPQRLSSSISRFEISYNQFYGRIPTAVSSWTNVVVFDASKNFFNGSIPQGITALPKLTKLLLDQNQLTGPLPSDIISWKFLVTLNLSQNQLSGQMPDAIGRLPVLSELDLSENQFSGQIPSILPRLTNLNLSSNLLTGRIPSEFENSAFSSSFLNNSGLCADTPVLNLTLCNSGPQRESKDSSWSPALIISLVVVFLFVALLASFLIIRLYRKRKQGLDNSWKLISFQRRLSFTELNIVSSMTEQNIIGKGGYGTVYRVAVDGIGYVAVKKIWENKKLDHNLESSFHTEVKILSSIRHRNIVKLLCSISNEDTMILVYEYVENRSLDRWLNKKSKSSAVSGLGHHVVLDWPKRLQIAIGVAQGLSYMHHECSPPVVHRDVKTSNILLDGQFNAKVADFGLARMLIKPGELATMSTVIGSFGYIAPEYVQTTRVNEKIDVFSFGVILLELTTSKEANYGDEHSSLAQWARRHHQIGSNIEELLDKEVMESSYSDGMCKVFKLGVMCTEVLPASRPSMKEVLQVLLHCGESFAFGERHIGYYEDVPLLRNSKRESKLDVENDS* 1012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00087 1011 CDD STKc_IRAK 698 973 - -
Rops5g00087 1011 Pfam Leucine rich repeat N-terminal domain 36 72 IPR013210 -
Rops5g00087 1011 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 293 974 - -
Rops5g00087 1011 Pfam Protein kinase domain 694 971 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops5g00087 1011 SMART serkin_6 692 974 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops5g00087 1011 Gene3D Ribonuclease Inhibitor 345 620 IPR032675 -
Rops5g00087 1011 FunFam Receptor-like protein kinase HSL1 isoform A 35 185 - -
Rops5g00087 1011 SUPERFAMILY Protein kinase-like (PK-like) 676 974 IPR011009 -
Rops5g00087 1011 Gene3D Transferase(Phosphotransferase) domain 1 771 982 - -
Rops5g00087 1011 SUPERFAMILY L domain-like 44 377 - -
Rops5g00087 1011 FunFam Receptor-like protein kinase HSL1 isoform A 298 621 - -
Rops5g00087 1011 FunFam Kinase family with leucine-rich repeat domain-containing protein 771 988 - -
Rops5g00087 1011 SMART LRR_typ_2 244 268 IPR003591 -
Rops5g00087 1011 SMART LRR_typ_2 315 339 IPR003591 -
Rops5g00087 1011 SMART LRR_typ_2 146 170 IPR003591 -
Rops5g00087 1011 SMART LRR_typ_2 504 528 IPR003591 -
Rops5g00087 1011 SMART LRR_typ_2 194 220 IPR003591 -
Rops5g00087 1011 SMART LRR_typ_2 98 122 IPR003591 -
Rops5g00087 1011 SMART LRR_typ_2 573 596 IPR003591 -
Rops5g00087 1011 Pfam Leucine Rich Repeat 196 216 IPR001611 GO:0005515
Rops5g00087 1011 Pfam Leucine Rich Repeat 124 146 IPR001611 GO:0005515
Rops5g00087 1011 ProSitePatterns Serine/Threonine protein kinases active-site signature. 825 837 IPR008271 GO:0004672|GO:0006468
Rops5g00087 1011 ProSiteProfiles Protein kinase domain profile. 692 981 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops5g00087 1011 FunFam Putative leucine-rich repeat receptor-like protein kinase family protein 190 290 - -
Rops5g00087 1011 SUPERFAMILY RNI-like 291 596 - -
Rops5g00087 1011 ProSitePatterns Protein kinases ATP-binding region signature. 698 721 IPR017441 GO:0005524
Rops5g00087 1011 Gene3D Ribonuclease Inhibitor 35 210 IPR032675 -
Rops5g00087 1011 Gene3D Ribonuclease Inhibitor 211 344 IPR032675 -
Rops5g00087 1011 Gene3D Phosphorylase Kinase; domain 1 675 770 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00087 Rops-Chr5 1412880 1422977 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00087 32 1010 Receptor kinase-like Gene Family AT5G25930 49.294 0.0 914
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Rops5g00087 Pkinase 1.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00087 - - gmx:100798963 1536.93