Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00086 ATGAAAATACTGACACTTTCATGTGTTAAATTTCTATTTCACTCTCTTCTGACCTTATTCCTCATACCGAGCCATGCAAACTCTCAGTCCCAGTCTCAGCTGCATGATCAAGAACATGCAATCCTAATGAAGATAAAACAATACTTTGATAACCCTCCGTTGCTCAATCACTGGACCTCAAACTCCTCTCGCTGTTCTTGGCCAGAGATCACTTGCACCAGTGGTTCTGTCACTGGACTAGCGTTGGTTGAAATCAACATCAATCAAACTATACCACCTTTCATATGTGACCTCAAAAACCTTACACTTGTTGATTTCAACAACAATTTCATTCCTGGGGAGTTCCCAACATATCTCTACAACTGTTCCAAGTTGGAGTATCTAGACCTTTCAATGAACAACTTTGTTGGTGAGATTCCTAATGACATTCATCATTTGTCTAATTTGAAGAATCTTAACCTCAGTTACACCAACTTCTCTGGTGACATTCCTGCTAGTATTGGAAGGCTAAAGGAACTGAGATATCTTGCACTTCAATATTGTCTATTTAATGGAACCTTCCCTGATGAGATTGGCAACCTGTTTAATCTTGAAACCTTGGATTTGTCCTCCAACAGCTTGTTCCTTCCTTCAAGGTTACCCAAGAATTGGACCCAGTTGAACAAATTGAAGGTCTTTTATATGTATGAATGCAACTTGGTTGGGGAAATTCCAGAAACCATTGGACAAATGGTGGCCTTGGAGAAAATGGATGTATCACAGAATGCTTTAACTGGAAACATTCCAATTGGTGTGTTCATGCTGAAGAATCTGAGCATACTGTTTCTTCACAAAAACAATCTTTCTGGGGAGATACCAAGTGTGGTTGAAGCACTAAATTTGACCATTCTTGAATTTACAAGGAATAATCTTTCAGGGAAAATACCAGAAGATTTTGGAAAGCTCCAAAAGTTGACAGGCTTGGCTTTGTCTATGAATAACTTGTCAGGCGAGATACCACAAAGCATAGGTAGTCTTCCATCTCTGATAGATTTTCGTGTCTTTATGAACCACTTGTCAGGTACTCTTCCTCCTGATTTTGGCCGCTACTCAAAGCTTGGATCCTTTCTGATTTCATCAAACAGTTTTAAGGGAAGGTTACCAGAGAACTTATGTTATCATGGTGAGTTTCGTAATTTAACTGTTTATGAAAATTATCTGATTGGGGAGTTGCCAAAATCACTAGGAAATTGCAGCACCCTGCAGGATCTTAAAATTTACAGTAATGAGTTTTCTGGCAAGATTCCTAGTGGTCTTTGGACTTCCTCCAATTTGGTGCATTTCATGGTAAAACACAATAAGTTCACTGGTGAGCTTCCTCAAAGATTGTCTTCTAGTATTTCACTCTTGCAGATAAGTTACAATCAGTTTTATGGTAGGATTCCTACTGGAGTATCTTCATGGACTAATGTGGTAGTGTTTGATGCAAGTAAGAACTTCTTTAATGGAAGTATTCCACAAGGGCTAACGGCTCTTCCCAAGTTAACAAAACTGTTGCTTGATCAGAACCAGCTCACAGGGCCACTTCCATCAGATATAATATCATGGAAGTCCCTAGTGACTCTAAATTTGAGCCAAAATCAACTCTCTGGACAAATCCCAGATGCAATTGGCCGGTTACCTGTCCTTGGTGAGCTTTACCTGTCAGAAAATCAATTGTCTGGCCAAATTCCTTCCATACTTCCCAGACTCACCAATCTCAATCTATCCTCCAATCTTTTGACTGGGAGGATTCCAAGTGACTTTGAAAATTCTGCATTTTCCAGCAGCTTTTTGAACAATTCTGGTCTTTGTGCTGATACCCCAGTATTGAACCTTACCTTGTGCAATTCTGGCCCTCAAAGGGAAAGCAAGGACTCATCTTGGTCTCCTGCTTTGATTATAGACCTGGTGGTAGTGTTCCTCTTTGTGGCTTTGTTGGCAACATTCTTGATTATTAGACTTTACAGAAAAAGAAAGCAAGGATTGGATAACTCATGGAAGCTCATTTCCTTTCAAAGAAGGTTGAGTTTCACTGAATTAAACATAGTATCCTCAATGACAGAACAAAATATTATTGGAAATGGAGGATATGGTACAGTGTACCGTGTTGCTGTTGATGGTTTAGGCTATGTTGCTGTGAAGAAGATTTGGGAAAACAAAAAGTTAGACCATAATCTTGAGAGCTCATTTCATACTGAAGTTAAAATATTGAGCAGCATTCGTCATAGAAACATTGTGAAGTTGTTGTGTTGTATCTCTAATGAGGATACCATGATCCTTGTCTATGAGTATGTGGAAAACCGTAGCCTTGATAGGTGGCTGAACAAGAAGAGTAAGTCATCAGCTGTGTCAGGTTTGGGCCATCATGTTGTCCTTGATTGGCCAAAGAGATTGCAAATAGCCATTGGGGTTGCCCAAGGTTTGAGCTACATGCACCATGAATGCTCACCACCTGTTGTTCATAGAGATGTGAAAACAAGCAACATCCTTTTGGATGGTCAATTCAATGCAAAAGTTGCTGATTTTGGCCTGGCTAGGATGCTGATCAAGCCAGGGGAACTTGCCACCATGTCAACTGTGATTGGCTCATTTGGCTATATGGCTCCAGAATATGTTCAAACAACTCGAGTCAATGAAAAGATTGATGTCTATAGCTTTGGGGTTATCCTATTGGAGCTGACAACTAGTAAAGAAGCTAATTATGGAGATGAACACTCATCTCTTGCACAATGGGCAAGGCGTCACCACCAGATAGGAAGCAATATTGAAGAATTACTAGACAAAGAAGTCATGGAATCAAGTTACTCGGATGGAATGTGCAAGGTTTTCAAACTTGGGGTCATGTGTACTGAAGTACTTCCTGCTAATAGACCTTCCATGAAGGAGGTCCTCCAAGTATTGCTCCATTGTGGAGAATCATTTGCCTTTGGAGAGAGGCATATTGGCTATTATGAAGATGTTCCCCTCCTAAGAAATTCAAAAAGAGAGTCCAAGTTGGATGTTGAGAATGATAGCTAG 3039 0.4008 MKILTLSCVKFLFHSLLTLFLIPSHANSQSQSQLHDQEHAILMKIKQYFDNPPLLNHWTSNSSRCSWPEITCTSGSVTGLALVEININQTIPPFICDLKNLTLVDFNNNFIPGEFPTYLYNCSKLEYLDLSMNNFVGEIPNDIHHLSNLKNLNLSYTNFSGDIPASIGRLKELRYLALQYCLFNGTFPDEIGNLFNLETLDLSSNSLFLPSRLPKNWTQLNKLKVFYMYECNLVGEIPETIGQMVALEKMDVSQNALTGNIPIGVFMLKNLSILFLHKNNLSGEIPSVVEALNLTILEFTRNNLSGKIPEDFGKLQKLTGLALSMNNLSGEIPQSIGSLPSLIDFRVFMNHLSGTLPPDFGRYSKLGSFLISSNSFKGRLPENLCYHGEFRNLTVYENYLIGELPKSLGNCSTLQDLKIYSNEFSGKIPSGLWTSSNLVHFMVKHNKFTGELPQRLSSSISLLQISYNQFYGRIPTGVSSWTNVVVFDASKNFFNGSIPQGLTALPKLTKLLLDQNQLTGPLPSDIISWKSLVTLNLSQNQLSGQIPDAIGRLPVLGELYLSENQLSGQIPSILPRLTNLNLSSNLLTGRIPSDFENSAFSSSFLNNSGLCADTPVLNLTLCNSGPQRESKDSSWSPALIIDLVVVFLFVALLATFLIIRLYRKRKQGLDNSWKLISFQRRLSFTELNIVSSMTEQNIIGNGGYGTVYRVAVDGLGYVAVKKIWENKKLDHNLESSFHTEVKILSSIRHRNIVKLLCCISNEDTMILVYEYVENRSLDRWLNKKSKSSAVSGLGHHVVLDWPKRLQIAIGVAQGLSYMHHECSPPVVHRDVKTSNILLDGQFNAKVADFGLARMLIKPGELATMSTVIGSFGYMAPEYVQTTRVNEKIDVYSFGVILLELTTSKEANYGDEHSSLAQWARRHHQIGSNIEELLDKEVMESSYSDGMCKVFKLGVMCTEVLPANRPSMKEVLQVLLHCGESFAFGERHIGYYEDVPLLRNSKRESKLDVENDS* 1013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00086 1012 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 15 969 - -
Rops5g00086 1012 SMART serkin_6 693 975 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops5g00086 1012 ProSiteProfiles Protein kinase domain profile. 693 982 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops5g00086 1012 Gene3D Ribonuclease Inhibitor 146 212 IPR032675 -
Rops5g00086 1012 SUPERFAMILY L domain-like 41 377 - -
Rops5g00086 1012 Pfam Leucine Rich Repeat 124 146 IPR001611 GO:0005515
Rops5g00086 1012 Pfam Leucine Rich Repeat 196 214 IPR001611 GO:0005515
Rops5g00086 1012 Gene3D Transferase(Phosphotransferase) domain 1 772 983 - -
Rops5g00086 1012 Gene3D Phosphorylase Kinase; domain 1 676 771 - -
Rops5g00086 1012 FunFam Kinase family with leucine-rich repeat domain-containing protein 772 989 - -
Rops5g00086 1012 ProSitePatterns Protein kinases ATP-binding region signature. 699 722 IPR017441 GO:0005524
Rops5g00086 1012 Gene3D Ribonuclease Inhibitor 37 145 IPR032675 -
Rops5g00086 1012 FunFam Putative leucine-rich repeat receptor-like protein kinase family protein 190 290 - -
Rops5g00086 1012 SUPERFAMILY RNI-like 291 597 - -
Rops5g00086 1012 SMART LRR_typ_2 574 597 IPR003591 -
Rops5g00086 1012 SMART LRR_typ_2 146 170 IPR003591 -
Rops5g00086 1012 SMART LRR_typ_2 530 553 IPR003591 -
Rops5g00086 1012 SMART LRR_typ_2 505 529 IPR003591 -
Rops5g00086 1012 SMART LRR_typ_2 315 339 IPR003591 -
Rops5g00086 1012 SMART LRR_typ_2 268 292 IPR003591 -
Rops5g00086 1012 SMART LRR_typ_2 194 220 IPR003591 -
Rops5g00086 1012 FunFam Receptor-like protein kinase HSL1 isoform A 35 185 - -
Rops5g00086 1012 Pfam Leucine rich repeat N-terminal domain 36 72 IPR013210 -
Rops5g00086 1012 CDD STKc_IRAK 699 974 - -
Rops5g00086 1012 Gene3D Ribonuclease Inhibitor 213 347 IPR032675 -
Rops5g00086 1012 Gene3D Ribonuclease Inhibitor 348 620 IPR032675 -
Rops5g00086 1012 FunFam Kinase family with leucine-rich repeat domain-containing protein 674 771 - -
Rops5g00086 1012 Pfam Protein kinase domain 695 972 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops5g00086 1012 ProSitePatterns Serine/Threonine protein kinases active-site signature. 826 838 IPR008271 GO:0004672|GO:0006468
Rops5g00086 1012 SUPERFAMILY Protein kinase-like (PK-like) 677 975 IPR011009 -
Rops5g00086 1012 FunFam Receptor-like protein kinase HSL1 isoform A 298 622 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00086 Rops-Chr5 1412699 1426035 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00086 32 1011 Receptor kinase-like Gene Family AT5G25930 49.093 0.0 915
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Rops5g00086 Pkinase 2.7e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00086 - - gmx:100798963 1519.21