LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops5g00080	ATGGGGAGAGCCACAAGGTGGTTGAAGAGCTTGTTTGGGATAAAAGGGGACAAAGAACATAAACAAAACTCAAACTTTGGAGACCCCAGGAGCATGAAACATGCTTCTTCTTCTGCTCATTCTGAGATTAATTCAAGAGTCTTGTGTCACAATCCAGCTACAATACCACCCAACATTTCTCCATCAGAAGCTGCTTGGTTACAATCTTTCTACACAGAAAAAGAGAAGGAGCAGAACAAGCATGCCATTGCTGTTGCTGCAGCCTCAGCAGCAGCAGCTGATGCAGCTGTGGCTGCTGCAAACGCTGCAGTGGCAGTGGTTAGGCTAACCAGCCATGGAAGGGGAACCATGTTTGGTGGTGGACATGAGATTTTGGCTGCTATCAAGATTCAAACAGTGTTTAGAGGATACCTTGCAAGGAAGGCACTGAGAGCCTTAAAAGGATTGGTGAAGTTACAAGCACTTGTGAGAGGGTATTTAGTGAGGAAGGAAGCAACTGCAACACTGCATAGTATGCAGGCTCTTATAAGAGCTCAGGCAACAGTTAGGTCTCAGAAATCTCACAGGCTTATGAACACAAAGAATGAAACGTACAGATTTCAAAACCGAGCAAGAAGATCCATGGAAAAAATTGATTCCACTAGGAATGACTACATAGCTCCAAGCCATAGTAGAAGGTTGTCATCTTGTTTTGATGCCACAATTAACAACAACAACAGTGTTGATGGGAGTCCCAAAATAGTGGAAGTGGACACTGGTAGGCCTAAGACAAGGTCTCGCAGGACCAACACATCAATATCAGATTTTGGTGATGACCTTTCATTCCAAGAACTTTCCTCTCCCTTTCCAATCCCATGTAAGACCCCAGCTCGTTTATCTATACCAGACCATAGGAATTTTCAGGATTCCGATTGGGGGTTAACAGGGGAAGAATGTAGATTCTCTACAGCACAAAGCACTCCAAGGTTCACACATTCTTGTAGTTGTGGCTCAGTTGCACCTTTGACACCAAAGAGTGTATGCAATGATAACTTACTCCTAAGGCAATATGGGAATTTTCCACATTACATGGCTAGCACTCAGTCTTTCAAGGCCAAGTTGAGGTCTCATAGTGCTCCAAAGCAAAGGCCAGAACCAGGTCCAAAGAGGAGGCTGTCCCTCAATGAAATGGTGGAGTCTAGGAGTAGTTTAAGTGGGGTTGGAATGCAAAGGTCTTGCTCACAGGTTCAAGAAGTGATTAATTTCAAGAATGCTGTGATGGGTAAGCTTCACAAGTCCACAGAATTTGCCAGGGAGACCGACAGAAACTACTTCCACCATAGGAGGTGGTGA	1332	0.4459	MGRATRWLKSLFGIKGDKEHKQNSNFGDPRSMKHASSSAHSEINSRVLCHNPATIPPNISPSEAAWLQSFYTEKEKEQNKHAIAVAAASAAAADAAVAAANAAVAVVRLTSHGRGTMFGGGHEILAAIKIQTVFRGYLARKALRALKGLVKLQALVRGYLVRKEATATLHSMQALIRAQATVRSQKSHRLMNTKNETYRFQNRARRSMEKIDSTRNDYIAPSHSRRLSSCFDATINNNNSVDGSPKIVEVDTGRPKTRSRRTNTSISDFGDDLSFQELSSPFPIPCKTPARLSIPDHRNFQDSDWGLTGEECRFSTAQSTPRFTHSCSCGSVAPLTPKSVCNDNLLLRQYGNFPHYMASTQSFKAKLRSHSAPKQRPEPGPKRRLSLNEMVESRSSLSGVGMQRSCSQVQEVINFKNAVMGKLHKSTEFARETDRNYFHHRRW*	444

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops5g00080	443	Gene3D	-	121	175	-	-
	Rops5g00080	443	Pfam	Protein of unknown function (DUF4005)	320	398	IPR025064	-
	Rops5g00080	443	Pfam	IQ calmodulin-binding motif	150	164	IPR000048	GO:0005515
	Rops5g00080	443	Pfam	IQ calmodulin-binding motif	126	144	IPR000048	GO:0005515
	Rops5g00080	443	ProSiteProfiles	IQ motif profile.	147	174	IPR000048	GO:0005515
	Rops5g00080	443	SMART	iq_5	145	166	IPR000048	GO:0005515
	Rops5g00080	443	SMART	iq_5	122	144	IPR000048	GO:0005515
	Rops5g00080	443	MobiDBLite	consensus disorder prediction	28	43	-	-
	Rops5g00080	443	MobiDBLite	consensus disorder prediction	18	43	-	-
	Rops5g00080	443	MobiDBLite	consensus disorder prediction	242	265	-	-
	Rops5g00080	443	ProSiteProfiles	IQ motif profile.	126	151	IPR000048	GO:0005515
	Rops5g00080	443	PANTHER	IQ-DOMAIN 5-RELATED	1	392	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops5g00080	Rops-Chr5	1344648	1346678	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops5g00080	1	402	IQD Protein Family	AT3G16490	48.780	3.65e-92	282

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops5g00080	-		-	aprc:113866809	705.671