Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00079 ATGTCAAACTTGCATTACATTTTCATTGTGCTGGCACTTCTTCTTCTTCTGCAAAATCCCAGTAGAATACATTGCCATACCAAGGGAATTAGACCAGGACATTCTGCAGGGAATGGTTTATCAACCAATATGTCTAGAGTGCAGTTTTCAGAAGAGCAATTCATGAAATGGGTGAACTTTGTTGGCAGCCTCAAACACTCAGTTTTTAAGACTGCAATAAATAAGCTTTCTGCTTCTTACAATTTGCATGTTGATAAGAATCCTGCTGCTGGAGATTTCACCTCAATTCAAGAAGCCATTGATTCTCTTCCATCAATCAATCTTGTGAGAGTGATCATCAAGGTCCATGCAGGTGTTTACACGGAGAAAGTTAACATTCCTCCTTTGAAATCCTTCATAACCATAGAAGGAGCTGGTGCAGATAAAACCATTGTTCAATGGAATGACACAGCACAAACACCTGGTCCAAAAGGGAGGCCAATGGGAACCTCTGGTTCAGCAACATTTGCTGTTAATTCACCTTATTTCATTGCCAAGAACATCACATTCCAAAACACTACTCCTGTTCCTGCACCAGGAGCAATTGGAAAACAGGCAGTGGCATTCAGAATTTCAGCAGACACAGCAGCATTCTTGGGCTGTAAATTCTTAGGAGCACAGGATACATTATATGACCATCTGGGCAGGCATTACTATAAGGATTGTTACATTGAAGGTTCTGTTGATTTCATATTTGGCAATGCACTCTCACTCTTTGAGGGATGTCACGTGCATGCAATAGCACAGAATACAGGGGCCCTAACAGCTCAAGGGAGGAGTAGTATGTTGGAAGACACGGGGTTCTCATTTGTGAACTGTAAGGTCACGGGGTCAGGGGCACTATACCTTGGAAGGGCTTGGGGTCCCTTTTCAAGAGTGGTGTTTGCTTACACCTACATGGACAACATCATCATTCCCAAAGGATGGTATAACTGGGGTGACCCTAACCGTGAATCGACTGTGTTCTATGGACAGTACAAATGCACAGGACCAGGAGCAAGCTTTGCAGGGAGAGTATCATGGTCAAGAGAACTCACTGAAGAAGAAGCTAGACCTTTTCTTTCACTTAGCTTTATTGATGGGACTGAATGGATCAAATTTTTAGTTTAA 1149 0.4256 MSNLHYIFIVLALLLLLQNPSRIHCHTKGIRPGHSAGNGLSTNMSRVQFSEEQFMKWVNFVGSLKHSVFKTAINKLSASYNLHVDKNPAAGDFTSIQEAIDSLPSINLVRVIIKVHAGVYTEKVNIPPLKSFITIEGAGADKTIVQWNDTAQTPGPKGRPMGTSGSATFAVNSPYFIAKNITFQNTTPVPAPGAIGKQAVAFRISADTAAFLGCKFLGAQDTLYDHLGRHYYKDCYIEGSVDFIFGNALSLFEGCHVHAIAQNTGALTAQGRSSMLEDTGFSFVNCKVTGSGALYLGRAWGPFSRVVFAYTYMDNIIIPKGWYNWGDPNRESTVFYGQYKCTGPGASFAGRVSWSRELTEEEARPFLSLSFIDGTEWIKFLV* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00079 382 Gene3D - 76 381 IPR012334 -
Rops5g00079 382 FunFam Pectinesterase 78 380 - -
Rops5g00079 382 ProSitePatterns Pectinesterase signature 2. 237 246 IPR033131 -
Rops5g00079 382 SUPERFAMILY Pectin lyase-like 78 380 IPR011050 -
Rops5g00079 382 Pfam Pectinesterase 90 374 IPR000070 GO:0030599|GO:0042545
Rops5g00079 382 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 70 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00079 Rops-Chr5 1327235 1332284 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00079 2 378 Carbohydrate Esterase AT5G47500 43.386 5.09e-104 309
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00079 K01051 - gmx:100793314 700.279