Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00070 ATGTCGTGGCAAACTTACGTGGATGATCACTTGATGTGCGATATCGATGGCACCGGACACCACCTCTCCGCCGCCGCCATCGTCGGCCACGACGGTTCCGTCTGGGCTCAGAGCTCTTCCTTCCCTCAGTTTAAGCCTGATGAGATGAATGGTATCATGAAAGATTTTGATGAACCTGGCCATCTTGCTCCTACTGGCTTGCACCTCGCTGGCGTCAAATACATGGTAATCCAGGGAGAGCCTGGAGCTGTCATCCGTGGCAAGAAGGGTTCTGGAGGTATCACCATAAAGAAAACCGGCCAAGCTCTAGTTTTTGGCATCTATGAGGAACCTGTGACTCCTGGACAGTGCAACATGGTTGTTGAGAGGTTGGGAGATTACCTTGTCGATCAGGGTCTGTAG 402 0.5199 MSWQTYVDDHLMCDIDGTGHHLSAAAIVGHDGSVWAQSSSFPQFKPDEMNGIMKDFDEPGHLAPTGLHLAGVKYMVIQGEPGAVIRGKKGSGGITIKKTGQALVFGIYEEPVTPGQCNMVVERLGDYLVDQGL* 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00070 133 CDD PROF 2 132 IPR005455 GO:0003779
Rops5g00070 133 Gene3D Dynein light chain 2a, cytoplasmic 1 133 - -
Rops5g00070 133 SMART prof_2 1 133 IPR005455 GO:0003779
Rops5g00070 133 PANTHER PROFILIN 1 132 IPR005455 GO:0003779
Rops5g00070 133 SUPERFAMILY Profilin (actin-binding protein) 2 132 IPR036140 -
Rops5g00070 133 PRINTS Profilin signature 42 62 IPR005455 GO:0003779
Rops5g00070 133 PRINTS Profilin signature 23 32 IPR005455 GO:0003779
Rops5g00070 133 PRINTS Profilin signature 3 12 IPR005455 GO:0003779
Rops5g00070 133 PRINTS Profilin signature 66 80 IPR005455 GO:0003779
Rops5g00070 133 PRINTS Profilin signature 102 115 IPR005455 GO:0003779
Rops5g00070 133 PRINTS Profilin signature 115 132 IPR005455 GO:0003779
Rops5g00070 133 FunFam Profilin 1 133 - -
Rops5g00070 133 Pfam Profilin 1 132 IPR005455 GO:0003779
Rops5g00070 133 ProSitePatterns Profilin signature. 1 8 IPR027310 GO:0003779
Rops5g00070 133 PRINTS Plant profilin signature 29 42 IPR005455 GO:0003779
Rops5g00070 133 PRINTS Plant profilin signature 73 82 IPR005455 GO:0003779
Rops5g00070 133 PRINTS Plant profilin signature 119 132 IPR005455 GO:0003779
Rops5g00070 133 PRINTS Plant profilin signature 54 68 IPR005455 GO:0003779
Rops5g00070 133 PRINTS Plant profilin signature 106 119 IPR005455 GO:0003779
Rops5g00070 133 PRINTS Plant profilin signature 1 14 IPR005455 GO:0003779
Rops5g00070 133 PRINTS Plant profilin signature 86 101 IPR005455 GO:0003779
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00070 Rops-Chr5 1244053 1246446 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00070 1 133 Cytoskeleton Gene Families AT4G29340 85.075 1.86e-83 239
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00070 K05759 - gmx:100778045 256.529