Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00066 ATGGAGAAGAGCTGGATTCTGGCTTTTCTCCTCCTCATTCTTCATTTAAGTACAACAAAAGCTGCCTTTGGTGTTAGTGGTGGGGTTGGTCTAGGTGTTGGTGTTGGCAATGGTGGTGGTGGTGGCAGTGGTGGAGTGGTTTGGGTTGGGGGAGGGATTAACAGCCCAAAGCCCCCTGGATCTTCAGTGCCAAAGCAGGATGCAGCTTACACAGCTCTTCAGGCGTGGAAATCTGCAATTACTGACGACCCACTAAAGATTTTAGATACTTGGGTTGGTTCTAATGTGTGTTCTTACAAAGGAGTCTTCTGTTCAAATCCTCGAGATGAAATGGCTGCATCAGCAGTCTCAGTTGTTGCAGGCATAGATCTCAACCATGCAAATCTCCAAGGAACTCTTGTGAAAGAGCTCTCTTTACTCAGTGATATGTCTCTCCTTCACCTCAACAGTAATAGATTTACTGGCACTGTTCCTGATACATTCAGGGACCTCTTTTCTCTGGAAGAGTTGGACCTCAGCAACAACCAACTTTCAGGTCCTTTCCCTGCTGTTACTCTGTACATGCCAAGCCTCATCTACTTGGACATCAGATTCAACTCCTTCTCAGGGACACTCCCTCAAGAACTTTTCAATAAGAATCTGGATGCTATATTTCTCAACAACAATCAATTTGAAGGTGAAATTCCCCAAAATTTGGGTAATTCCCCTGCCTCGGTGATAAATTTAGCCAACAACAAGTTGAGTGGAAACATCCCAGCAAGTTTTGGCTTCATGGGTTCTAAAATAAAGGAGATTCTGTTCCTCAATAACCAGTTAACTGGCTGCATTCCTGAAGGAGTGGGGCTCTTCACAGAGATGCAAGTTCTAGATGTGAGCTCCAATGCACTAATGGGTCATTTGCCAGACACAATATCTTGCCTGCAAGATATAGAAGTCCTGAATTTGGCACATAATCAACTTTCTGGGGAGTTATCAGATGTAATCTGCTCCCTGAGGAGCCTTCTAAATCTAACCGTTTCATACAATTTCTTTTCCGGATTCAGCCAGCAATGCTCAAGGCTTTTCTTTAGGAATGTGGGTTTTGATTTCTCACTTAACTGCATTCCTGGGAGGGACCTGCAGAGACCTCAACCTGAGTGCTCTATGATCCCAGGTGGTAGCCTGAGTTGTCTCAGAATCCCTACTCCAAAGCCTCTTGTTTGTGGTTCGCTGGCTGTAAGTGCCTCTAAGCAAACTGATCCCACTTCTCCATCTCCTTGA 1260 0.45 MEKSWILAFLLLILHLSTTKAAFGVSGGVGLGVGVGNGGGGGSGGVVWVGGGINSPKPPGSSVPKQDAAYTALQAWKSAITDDPLKILDTWVGSNVCSYKGVFCSNPRDEMAASAVSVVAGIDLNHANLQGTLVKELSLLSDMSLLHLNSNRFTGTVPDTFRDLFSLEELDLSNNQLSGPFPAVTLYMPSLIYLDIRFNSFSGTLPQELFNKNLDAIFLNNNQFEGEIPQNLGNSPASVINLANNKLSGNIPASFGFMGSKIKEILFLNNQLTGCIPEGVGLFTEMQVLDVSSNALMGHLPDTISCLQDIEVLNLAHNQLSGELSDVICSLRSLLNLTVSYNFFSGFSQQCSRLFFRNVGFDFSLNCIPGRDLQRPQPECSMIPGGSLSCLRIPTPKPLVCGSLAVSASKQTDPTSPSP* 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00066 419 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 57 407 - -
Rops5g00066 419 Gene3D Ribonuclease Inhibitor 67 235 IPR032675 -
Rops5g00066 419 PRINTS Leucine-rich repeat signature 307 320 - -
Rops5g00066 419 PRINTS Leucine-rich repeat signature 167 180 - -
Rops5g00066 419 Gene3D Ribonuclease Inhibitor 236 358 IPR032675 -
Rops5g00066 419 SUPERFAMILY L domain-like 70 353 - -
Rops5g00066 419 Pfam Leucine rich repeat 145 200 IPR001611 GO:0005515
Rops5g00066 419 FunFam Leucine-rich repeat extensin-like protein 1 70 234 - -
Rops5g00066 419 Pfam Leucine rich repeat N-terminal domain 69 105 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00066 Rops-Chr5 1214979 1216365 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00066 64 392 Leucine-rich Repeat extension Gene Families AT3G24480 50.448 4.49e-107 323
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00066 - - gmx:100775544 680.248