Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00064 ATGAATAAGATGAGCAACTTGAGTCCTGTAAGCAACTCTGATCTCATAGATGCAAAGCTTGAAGAGCATCAGTTGTGTGGATCCAAGCAGTGCCCCGGTTGCGGACACAAGTTTGAAGGGAAGCCGGATTGGCTTGGTCTTCCAGCAGGAGTGAAGTTTGATCCAACAGACCAAGAACTAATAGAACATCTTGAAGCCAAAGTGGAATCAAAGAATATGAAATCACACCCTTTGATAGATGAGTTCATTCCCACTATTGAAGGAGACGATGGAATTTGTTATACCCATCCTGAGAAACTTCCAGGAGTAACAAGAGATGGCTTGAGCAGACACTTTTTCCATAGACCTTCAAAGGCTTATACAACTGGGACAAGAAAGAGGAGAAAGATTCAAAACGAGTGTGACTTGCAAGGTGGAGAAACCCGGTGGCACAAGACAGGTAAGACCAGGCCAGTGATGGTGAATGGAAAACAAAAGGGTTGCAAGAAAATTCTAGTCCTCTATACCAATTTTGGGAAGAACAGAAAACCTGAGAAAACCAACTGGGTGATGCACCAATACCATTTGGGGCAACATGAAGAAGAGAAAGAAGGAGAGCTTGTTGTATCAAAGATCTTCTATCAGACACAACCAAGGCAATGCAACTTGTCAGACAGAAGTGCAACAACTGGTGAAGCAAGTGGAGAACCTAATAATAGTAGCAGAAGGGACAGTGGAAGTGGAAGTTGTTCTTCCAAGGAAATAGTTACTCACAGAGATGAGATGTCTGCTGTTGTTGGAGTCCCTCCAATAACAAGTTTCACTCATCCCTTGGATATTCAACACCTAAAATCAGACCATTTCAGCTTCATCCCTTTCAGGAAAAGCTTTGATGAGGTTGGAATAGGAGAGGCTTCCACAGCAAGAGAAGTGCAAGCATCAGGCTCATGTGAAGAAGTACATGAACGGCATGTGGCTCATCATCATCATCATCATCAACAACAACAGCAGCAACATCACCATCAGATTGCAACCTCATCTTTCCATATAAGTAGGCCTTCACATCCCATCTCTACCATTATCTCTCCACCTCCCCTCCACCACACATCCATCATTCTCGATGACAACTCTTACCACGTCTCTAGAATAATGCTCCAAAACGAAAATTTCCAGCAACAGCAGCAACAACATCATAAGCTAGGAGGAAGGTCTGCGTCTGGTTTGGAGGAACTCATCATGGGGTGCACTTCAACTGATATCAAAGAGGAGTCATCCATCACAAATCCACAAGAAGCTGAATGGTTGAAGTACTCTTCTTATTGGCCAGACCCTGACAACCCGGATCATCATGGGTAG 1335 0.439 MNKMSNLSPVSNSDLIDAKLEEHQLCGSKQCPGCGHKFEGKPDWLGLPAGVKFDPTDQELIEHLEAKVESKNMKSHPLIDEFIPTIEGDDGICYTHPEKLPGVTRDGLSRHFFHRPSKAYTTGTRKRRKIQNECDLQGGETRWHKTGKTRPVMVNGKQKGCKKILVLYTNFGKNRKPEKTNWVMHQYHLGQHEEEKEGELVVSKIFYQTQPRQCNLSDRSATTGEASGEPNNSSRRDSGSGSCSSKEIVTHRDEMSAVVGVPPITSFTHPLDIQHLKSDHFSFIPFRKSFDEVGIGEASTAREVQASGSCEEVHERHVAHHHHHHQQQQQQHHHQIATSSFHISRPSHPISTIISPPPLHHTSIILDDNSYHVSRIMLQNENFQQQQQQHHKLGGRSASGLEELIMGCTSTDIKEESSITNPQEAEWLKYSSYWPDPDNPDHHG* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00064 444 FunFam NAC domain-containing protein 73 56 212 - -
Rops5g00064 444 Gene3D NAC domain 56 212 IPR036093 GO:0003677|GO:0006355
Rops5g00064 444 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 13 332 IPR044799 GO:0003700
Rops5g00064 444 MobiDBLite consensus disorder prediction 213 246 - -
Rops5g00064 444 Pfam No apical meristem (NAM) protein 48 189 IPR003441 GO:0003677|GO:0006355
Rops5g00064 444 MobiDBLite consensus disorder prediction 318 342 - -
Rops5g00064 444 MobiDBLite consensus disorder prediction 213 248 - -
Rops5g00064 444 SUPERFAMILY NAC domain 43 208 IPR036093 GO:0003677|GO:0006355
Rops5g00064 444 ProSiteProfiles NAC domain profile. 47 208 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00064 Rops-Chr5 1186050 1190888 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00064 11 441 NAC Transcription Factor Family AT5G56620 54.860 6.67e-138 400
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Rops5g00064 NAM 2.5e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00064 - - gmx:100795246 797.734