Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00058 ATGATGCTCGGAGAACACCATCGTTCAAATCCAACGGTCCACGTGCCTCCGTGGCCAATACATGATGATCCAACGGCTGAGATGTACTCGCCGTATTTCTCAAACGACGGCAATGCCGGCGGTGAGTATTCTCCGTACTACGTGCAAGAAGCGCTGGCGGCGCTTCAGCGTTATTTGCCGTCGAACGAGACGGATGTGGATTCGGATTCTGATGTTCCGGGTCGTGAATCGGATGCTCCGGTTGATGCTTATTCATGCGACCATTTTCGCATGTTTGAGTTTAAGGTGAGAAGATGCGCACGTGGCAGGTCACATGACTGGACGGAGTGTCCGTATGCTCATCCCGGAGAGAAGGCTCGCCGGCGGGACCCGAGGAAGTTTCACTATTCCGGCACGGCGTGTCCTGATTTTCGTAAAGGGAATTGCAAGAAGGGAGATTCATGCGAGTTCGCGCATGGTGTTTTTGAGTGTTGGCTCCACCCTGCACGTTACCGAACTCAGCCGTGCAAGGATGGAACCAGTTGCCGGCGGCGGGTGTGCTTCTTTGCTCACACGCCGGAGCAGTTACGTCTTGTGCCGCAGCAGAGTCCCCGGAGTGGCAACTCGGTGGATTCTTATGATGGGTCTCCTATGAGACAAGTGGGGGTGAGTTTCATGTCATCTCCGGCGTCTATCTCGCCGCCGGTGAGTCCTACTGCGGAGTCGCCGCCCATGTCGCCGATGACGCAGTCGCTGAGTAGGTCTCTGGGTTCGAGTTCAATCAACGAGATGGTGGCTTCTCTTAGGAATTTGCAAGTTGGAAAGGTTAAGTCTTTGCCTTGTAACAGGAATATTCCAATGGGGTCTCCGGGTTTCGGGTCTCCTAGGGGACCCATGACCCGACCCGGGTTTTGTAGCCTACCCACTACACCAACTCAGGCACCGCGTCGGTCTGGTGTTAACTATTTTGATATGTGGGATCAGAGTTGTGAGGAGGAGCCTGTGATGGAGAGGGTGGAATCTGGGAGGGACATTAGGGCTAAGATGTTTGAGAAGTTGAGCAAAGAGAATTCTTTGGATGGGTCGGGTTCGGGTCAATCGGGTGGAGCCCCGGATGTTGGGTGGGTTTCTGAGCTTGTGAAGTGA 1125 0.5431 MMLGEHHRSNPTVHVPPWPIHDDPTAEMYSPYFSNDGNAGGEYSPYYVQEALAALQRYLPSNETDVDSDSDVPGRESDAPVDAYSCDHFRMFEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKFHYSGTACPDFRKGNCKKGDSCEFAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQLRLVPQQSPRSGNSVDSYDGSPMRQVGVSFMSSPASISPPVSPTAESPPMSPMTQSLSRSLGSSSINEMVASLRNLQVGKVKSLPCNRNIPMGSPGFGSPRGPMTRPGFCSLPTTPTQAPRRSGVNYFDMWDQSCEEEPVMERVESGRDIRAKMFEKLSKENSLDGSGSGQSGGAPDVGWVSELVK* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00058 374 MobiDBLite consensus disorder prediction 349 374 - -
Rops5g00058 374 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 133 153 IPR000571 GO:0046872
Rops5g00058 374 ProSiteProfiles Zinc finger C3H1-type profile. 129 155 IPR000571 GO:0046872
Rops5g00058 374 Gene3D - 129 191 - -
Rops5g00058 374 FunFam Zinc finger CCCH domain-containing protein 66 86 154 - -
Rops5g00058 374 SMART c3hfinal6 128 154 IPR000571 GO:0046872
Rops5g00058 374 SMART c3hfinal6 163 186 IPR000571 GO:0046872
Rops5g00058 374 PANTHER UNKEMPT FAMILY MEMBER 50 374 IPR045234 -
Rops5g00058 374 MobiDBLite consensus disorder prediction 220 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00058 Rops-Chr5 1093780 1095371 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00058 78 279 C2H2 Transcription Factor Family AT5G12850 49.770 3.77e-58 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Rops5g00058 zf-CCCH 2.7e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00058 - - aprc:113867365 684.871