Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00057 ATGGGAAGGGCTCCATGTTGTGACAAATCTAACGTGAAAAAAGGGCCATGGTCTCCTGAAGATGATGCCACCCTCAAAAACTACCTTGAGAAACATGGCACAGGTGGTAATTGGATAGCACTCCCACAAAAAGCAGGCCTTAAACGTTGTGGGAAGAGTTGTCGTTTAAGATGGCTGAACTATCTCAGGCCTCATATCAAGCTTGGAGGTTTCACTGAGGAGGAAGACAAAATTATTTGCACCTTTTATGGCACCATTGGAAGCAGGTGGTCCCTTATAGCAGCTCAATTGCCTGGAAGAACTGACAATGATGTGAAAAATCACTGGAACACCAAGCTAAAGAAAAAGGTTTTGGCAGCAAAATCCAGTATTTCCACAAGCAACAATAGCAAGACTAGTTTTTCTGATCACTTCTCAACTTTTTCTCTTCAACCTCAAATTGAAGCCTTTGTCTTTGATAAAAAAAAGAACTCAGCTTGTTTTAACTCCCACAATGATTTGGACTTGGAGCAAACACCAATTCAAGTTCCTTTACAAATGCCTTTGGAATCAGAAGATTTTTATCCTAGGAGCAGCAGTTGTAGTGCACCATCCACCAAGGAAGTTTCAATTCTTTCTAATGCAGCTTCCTTAACAGAGCAGAACAATCATACCCAATGGTTTGGTTATGACCATGAAGGTGAAGATGATGCGATTTTGCTTGAGTTTGTGCTTGAAGATCTACTGAATCACGGATTTGCTTCTCTAGACAAAAGCAGCCAAGTTGCTCCATCATCTGGCTAA 783 0.4125 MGRAPCCDKSNVKKGPWSPEDDATLKNYLEKHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPHIKLGGFTEEEDKIICTFYGTIGSRWSLIAAQLPGRTDNDVKNHWNTKLKKKVLAAKSSISTSNNSKTSFSDHFSTFSLQPQIEAFVFDKKKNSACFNSHNDLDLEQTPIQVPLQMPLESEDFYPRSSSCSAPSTKEVSILSNAASLTEQNNHTQWFGYDHEGEDDAILLEFVLEDLLNHGFASLDKSSQVAPSSG* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00057 260 Gene3D - 6 68 - -
Rops5g00057 260 Gene3D - 70 138 - -
Rops5g00057 260 SMART sant 13 64 IPR001005 -
Rops5g00057 260 SMART sant 67 115 IPR001005 -
Rops5g00057 260 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Rops5g00057 260 CDD SANT 71 111 IPR001005 -
Rops5g00057 260 PANTHER OS09G0431300 PROTEIN 1 218 - -
Rops5g00057 260 FunFam Transcription factor RAX3 7 68 - -
Rops5g00057 260 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Rops5g00057 260 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Rops5g00057 260 CDD SANT 16 62 IPR001005 -
Rops5g00057 260 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Rops5g00057 260 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Rops5g00057 260 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Rops5g00057 260 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00057 Rops-Chr5 1073154 1074537 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00057 1 136 MYB Transcription Factor Family AT5G57620 72.794 8.25e-73 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops5g00057 Myb_DNA-binding 4e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00057 K09422 - gmx:778160 345.125