Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00056 ATGGCAAATTCAATTGGATTCATTCTGTTGTTGATGCTTTGTGTTGTTGGTCTTACAGTTTTAGTTCATGCACAGCAACAAACAGGCTTCATTAGCATTGATTGTGGTGGTCCAGAGAATTTTGAGTACACAGATGATTCCACTAAAATTAAGTACAACACAGATGGAGCCTATATAAACACAGGGGTTAACAAAAACATCTCCTCTGAGTATCAATATCCAAAGAATCCTATTCTGCCATTACCACTCTCAGATCTCAGAAGTTTTCCTGTGGGAAAGAGGAACTGTTACAGGTTAACAGCTGGAAGAAGAGGAAGTTTACATTTAATAAGGGCTTCCTTTTTGTATGGAAACTATGATGGAGGAAACAAACTACCAGAATTTGATCTCTATGTTGGTGTCAATTTCTGGTCAACAGTGAAATTTAGAAATGCTTCAGAGGAAGTTACAATGGAAATAATCAGTATGGCACAATCAGAGGTGACAAATGTTTGTCTTGTGAACAAAGGAACAGGAACTCCTTTTATCTCAGCATTGGAACTTAGACCACTCAATAGTTCCATTTATAATACTGAGTTTGGGGAATCTGCTTCATTGTTACTTTTCAAAAGATGGGACATTGCATCATTAAATGGAAGTGGTAGATATGAAGATGATATTTATGATAGAATTTGGTCTCCCTATAACACTTCTTCCTGGGATTCTGTTAGCACTTCTTCAAGAATAAATGTTAATGGAGATGGCTATAGAGCACCATTTGAAGTCATCAGAACTGCTGCTAGACCAAGGAATGGCAGTGATTCTTTAGAATTTTCCTGGACCCCAGATGATCCAAATTGGAAATTTTATGTTTATTTGTACTTTGCTGAAGTGGAGAAGCTTCAGAAAACCCAACTGAGGAAATTCAATATATCCTGGAATGGATCTCCATTGATTGAATCTGTAGTACCACGCCACTTGCTTGCAACCACTCTTTCTAATTCAAAATCCTTGGTGGCAAATGAGCATAGAATTTCTATACACAAAACAAAAGATTCAACCCTTCCACCTATTCTTAATGCAGTTGAGATTTATGTAGCAAGACAGCTAGATGCACTTCCAACATTGGAACAAGATGTTGATGCTATGATGGACATAAGAGAAAGTTATAGAGTTCAAAGAAATTGGGTGGGAGATCCATGTGAGCCAAAGAACTACACTTGGGAGGGCTTAAAATGCAACTACAGCACTTCACTTCCTCCACGAATTATATCACTGAATCTGAGCTCAAGCAGTTTGAGTGGAATAATAACTCCTGCTATTTCCAATCTCTCTTCATTGGAATCTTTGGATTTAGGTAACAATAGCTTAACTGGATCAGTGCCTCAGTTTTTGGAAGAATTGAGATCCCTTAAATATTTGAATTTAAAGGGCAACCAACTTTCAGGTTATGTCTCTACCACTCTTCTAGAAAGATCAAAGAATGGATTACTTACACTGAGGCTGGATGAAAAAAATTTGCATGTCTCAGATACGAGTGACAAAAAGAAAATTGTTGTTCCCATAGTCGCATCAGTATTATCAGTTTTAGTTCTTTTGGTTATTTTCATTCTCTTTTGGAAGCTTAGAAGAAATAAGCAATCAGAGGAGGAGATGAGAATGCTTAACAAAGGAGGAAGAACTGTAGCATCAAAGAAGTGGCAATACACGTATAATGAGGTCTTGGACATCACCAGAAACTTTGAAAAGGTCATTGGAAAGGGTGGATTTGGAACTGTGTACTGTGGTCAGATGAAAGATGGCGATAAAGTTGCAGTCAAGATGCTTTCTCCATCATCAACTCAGGGGCCAAAGGAATTTCAGACTGAGGCTGAGCTCTTGATGACTGTTCATCACAAAAATTTGGTATCCTTCACTGGTTATTGTGATGAAGATAACAAAATGGCACTCATATATGAATACATGGCCAATGGCAACCTGAAAGATTATCTCTCAGATAGAAATCCACATTGCTTGAGTTGGGAAAGGAGACTTCAGATAGCAATCGATGCCGCAGAGGGATTGGATTACCTACACCATGGATGCAAGCCACCTATAATACACAGGGATGTGAAATCAGCCAACATTCTTTTAAGTCAAGACTTGGAAGCTAAGATAGCAGATTTTGGCCTGTCCAAGGTGTTTAAGAATGATAACCGAAATGCAGAATCAGTAGTAGTGATTCATGATGATGATAGCAATGCACAATCTGCAATCATGGGCACTACAGGGTACCTTGACCCAGAGTACTACAAATTAAGGAACTTGACTGAGAAAAGTGACATCTATAGCTTTGGAGTTGTTCTACTGGAATTAATCACAGGTCGGCCAGCAATATTAAAAGGAAAGCCATTAATGCACTTACTTGAGTGGATAAGGCCTGAGCTTGAAAGAGAGGACTTGAGTAGAATTTTAGATCCAAGGCTCCAAGGGAAATTTGATGCAAGTTCTGCATGGAAGGCTTTAGGAATAGCAATGGCATGCACTGCATCAACCTCCATTCAGAGACCTATAATGAGTGTTGTATTAGCAGAGCTAAAACAATGTTTTAAAATGGAGTCTCCTAGTGAAAGTGAAAAATTTGTCTCCCCAAGACAGTTCTATAGTGAATTTTACAGTTCATCTGAAGCATATTCCATGGATAGTGAATCTATCACATATCCTTTCCCAAGGTAG 2694 0.3838 MANSIGFILLLMLCVVGLTVLVHAQQQTGFISIDCGGPENFEYTDDSTKIKYNTDGAYINTGVNKNISSEYQYPKNPILPLPLSDLRSFPVGKRNCYRLTAGRRGSLHLIRASFLYGNYDGGNKLPEFDLYVGVNFWSTVKFRNASEEVTMEIISMAQSEVTNVCLVNKGTGTPFISALELRPLNSSIYNTEFGESASLLLFKRWDIASLNGSGRYEDDIYDRIWSPYNTSSWDSVSTSSRINVNGDGYRAPFEVIRTAARPRNGSDSLEFSWTPDDPNWKFYVYLYFAEVEKLQKTQLRKFNISWNGSPLIESVVPRHLLATTLSNSKSLVANEHRISIHKTKDSTLPPILNAVEIYVARQLDALPTLEQDVDAMMDIRESYRVQRNWVGDPCEPKNYTWEGLKCNYSTSLPPRIISLNLSSSSLSGIITPAISNLSSLESLDLGNNSLTGSVPQFLEELRSLKYLNLKGNQLSGYVSTTLLERSKNGLLTLRLDEKNLHVSDTSDKKKIVVPIVASVLSVLVLLVIFILFWKLRRNKQSEEEMRMLNKGGRTVASKKWQYTYNEVLDITRNFEKVIGKGGFGTVYCGQMKDGDKVAVKMLSPSSTQGPKEFQTEAELLMTVHHKNLVSFTGYCDEDNKMALIYEYMANGNLKDYLSDRNPHCLSWERRLQIAIDAAEGLDYLHHGCKPPIIHRDVKSANILLSQDLEAKIADFGLSKVFKNDNRNAESVVVIHDDDSNAQSAIMGTTGYLDPEYYKLRNLTEKSDIYSFGVVLLELITGRPAILKGKPLMHLLEWIRPELEREDLSRILDPRLQGKFDASSAWKALGIAMACTASTSIQRPIMSVVLAELKQCFKMESPSESEKFVSPRQFYSEFYSSSEAYSMDSESITYPFPR* 898
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00056 897 SUPERFAMILY L domain-like 375 496 - -
Rops5g00056 897 CDD STKc_IRAK 578 854 - -
Rops5g00056 897 Gene3D - 207 361 - -
Rops5g00056 897 SMART serkin_6 572 826 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops5g00056 897 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 648 859 - -
Rops5g00056 897 ProSitePatterns Serine/Threonine protein kinases active-site signature. 692 704 IPR008271 GO:0004672|GO:0006468
Rops5g00056 897 Gene3D Ribonuclease Inhibitor 366 491 IPR032675 -
Rops5g00056 897 FunFam Leucine-rich repeat receptor-like kinase 371 503 - -
Rops5g00056 897 ProSitePatterns Protein kinases ATP-binding region signature. 578 600 IPR017441 GO:0005524
Rops5g00056 897 Gene3D Phosphorylase Kinase; domain 1 578 648 - -
Rops5g00056 897 SUPERFAMILY Protein kinase-like (PK-like) 559 852 IPR011009 -
Rops5g00056 897 FunFam Leucine-rich repeat receptor-like protein kinase 550 647 - -
Rops5g00056 897 ProSiteProfiles Protein kinase domain profile. 572 856 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops5g00056 897 PANTHER OS07G0107800 PROTEIN-RELATED 31 856 - -
Rops5g00056 897 Pfam Malectin-like domain 33 358 IPR024788 -
Rops5g00056 897 Gene3D Transferase(Phosphotransferase) domain 1 649 874 - -
Rops5g00056 897 Pfam Leucine rich repeat 418 474 IPR001611 GO:0005515
Rops5g00056 897 Pfam Protein tyrosine and serine/threonine kinase 574 845 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00056 Rops-Chr5 1066512 1071440 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00056 8 883 Receptor kinase-like Gene Family AT4G29180 51.512 0.0 899
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Rops5g00056 Malectin_like 1.5e-108 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00056 - - gmx:100793137 1391.33