Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00036 ATGCCCCGTTCAGACAAGAGGATATGGGGCCTTTCAAGACTTGCTCCTCATTGTATCACTAGTCACTGGAGATCCCTTTTAGGAGCTGCTTCAGATCAGAGAGATGTTAGTGTAAATTCTTGTTCTCAAATGGTGCTTCAACTTCATGATTTTTATGATCCAGATAAGATAAAGATCAGAATAAAGATCCTTTCTGGTTCTTTATGTGGTGGAGCAGTGGCTGCTGAAGCCCGGAGAGTCCAATCAAGCTGGGTTATATTAGACAAAGAATTGAAGAATGAAAAGAAATACTGCTTGGAGGAGCTGAGTTGCAATATTGTAATCATGAAGCAATCTAGGCCAGAGATTCTACAACTGAATTTGATCAGTTCAACAAATATGGGACTTGAAGGGAAACTGAGTGCATTTCCTAAAAACTTCAAAGACAAGTCTGAACATCTAGATATGATTACAGGTTCAGTTGTTGTTCCTGTTAGTAGTCCAAAACAAGGGTTAAAATTGACTGCAGCTAACGTTGGAACATCATCAACATTTGTTCACTATGATAATAATGATAGACAAATCAGAGGTTTGCCGTTTGTTCTTGAGGAACTGACAAATCTGGAGGAAGGTGAAATAGATTCAGGGAGTCATGATTTGAGTTTGTCATCCAAAAGTTCATCTTTCCAGCCATGGATTTCAAATGCAATTTTTAATGATGATGGCGAATTTTCGAAACTCGAGGAGACTATGCATCAGAAATTCTCAAAATTGGATGAAGATCCTATTTTAGGAGAGCTTAATTGTAAACTTGACGTGAAGTTGTGCAGAAGTGTTAGAGAAGCAATTTCGCTAGCCAGAAATGCCCCTCATGGTACTCCCCCATTGTGCTCTATTTGTCAGCATAAGGCACCTGTAGTTGGGAATCCTCCAAGTTGGTTTACATTTGCTGAACTGCAACTTGCCACCAATGGATTTTCACAAGCAAATATTTTGGCTGAAGGTGAGTTTGGTTGTGTGCACCGTGGTTTGCTACCTGATGGCCAGGTCATTGCTGTCAAGCAGTGTAAATTAGCTAGTACTCAAGGTGATGAAGAATTTTGCTCAGAAGTAGAGGCCTTAAGCTGTGCACAACATCGTAATGTTGTGATGCTAATTGGGTTTTGTGTGGAGGATGGTAGAAGACTGCTAGTTTATGAATACATCTGCAATGGATCTCTATATTCTCATCTTCATGGACAAAAGCAGAATGCACTGAAATGGTCTGCACGTCAAAAAATTGCAGTGGGAGCAGCTCGTGGTTTGAGATACCTTCATGAAGAATGTAGAGTGGGTTGTATTGTGCACCGTGGCATGAGGCCTAACAATATTCTCCTCACTCATGACTTTGAAGCATTAGTGGGAGATTTTGGACTTGCCAGGTGGCAGCCGGATGGAGAAATGGGTGTGGAAACCAGGGTGATAGGGACATTTGGGTATTTGGCTCCAGAATACACTCAAAGTGGTCAAATCACTGAAAAAGCTGATGTGTACTCCTTTGGAGTAGTATTACTGGAGCTTGTCACAGGACAGAAAGCTGTGGATATAAACAAGCCCAAAGGCCAGCAATGTCTCAATGAATGGGCACGTCCACTGCTTGAGGGACATGCCATTCATGAACTGGTTGATCCAAGAATAAGAGACTGCAGTGTTGATCAAGAGGTTCATCGCATGCTGCAATGTTCCTTATTGTGCATTCAGCAGGATCCTCATTTAAGGCCACGAATGTCTGAGGTTGGAAAATTAAGTCGTGCTCCGGATGCTGGAAGGTGGCATTTTGATGTGATTGCAATCCATGTTTTCATTCCTGAGAACAATAGTGTAAAGCATAAAGGATAA 1857 0.4157 MPRSDKRIWGLSRLAPHCITSHWRSLLGAASDQRDVSVNSCSQMVLQLHDFYDPDKIKIRIKILSGSLCGGAVAAEARRVQSSWVILDKELKNEKKYCLEELSCNIVIMKQSRPEILQLNLISSTNMGLEGKLSAFPKNFKDKSEHLDMITGSVVVPVSSPKQGLKLTAANVGTSSTFVHYDNNDRQIRGLPFVLEELTNLEEGEIDSGSHDLSLSSKSSSFQPWISNAIFNDDGEFSKLEETMHQKFSKLDEDPILGELNCKLDVKLCRSVREAISLARNAPHGTPPLCSICQHKAPVVGNPPSWFTFAELQLATNGFSQANILAEGEFGCVHRGLLPDGQVIAVKQCKLASTQGDEEFCSEVEALSCAQHRNVVMLIGFCVEDGRRLLVYEYICNGSLYSHLHGQKQNALKWSARQKIAVGAARGLRYLHEECRVGCIVHRGMRPNNILLTHDFEALVGDFGLARWQPDGEMGVETRVIGTFGYLAPEYTQSGQITEKADVYSFGVVLLELVTGQKAVDINKPKGQQCLNEWARPLLEGHAIHELVDPRIRDCSVDQEVHRMLQCSLLCIQQDPHLRPRMSEVGKLSRAPDAGRWHFDVIAIHVFIPENNSVKHKG* 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00036 618 Pfam Protein tyrosine and serine/threonine kinase 322 585 IPR001245 GO:0004672|GO:0006468
Rops5g00036 618 SUPERFAMILY Protein kinase-like (PK-like) 300 585 IPR011009 -
Rops5g00036 618 CDD STKc_IRAK 325 585 - -
Rops5g00036 618 Gene3D Transferase(Phosphotransferase) domain 1 395 595 - -
Rops5g00036 618 ProSiteProfiles Protein kinase domain profile. 319 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops5g00036 618 Gene3D Phosphorylase Kinase; domain 1 291 394 - -
Rops5g00036 618 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 291 394 - -
Rops5g00036 618 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 395 594 - -
Rops5g00036 618 PANTHER OS01G0750732 PROTEIN 228 588 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00036 Rops-Chr5 877153 880517 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00036 269 589 Trihelix Transcription Factor Family AT1G68690 49.080 4.07e-100 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Rops5g00036 PK_Tyr_Ser-Thr 6.2e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00036 - - aprc:113855006 875.159