Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00034 ATGGGCAGAAAGTGCTCACATTGTGGAAACATAGGCCATAATTCAAGGACCTGCACCTCTTTCAGAGGGAGTTTTGTAGGTGTTCGCCTGTTTGGTGTTCAACTAGACATATCCTCCTCTTGTTTTCCCATGAAGAAAAGCTTTAGCATGGATTCCTTTCCCTCTTCATCATCTCCATCTTCCTCCTTTTCTTCCTCAAGAATAGCCATTGATGACAGAAACTCTATTGGGTATCTATCAGATGGTCTCATAGTTGGAGCACAAGAGAGAAAGAAAGGAGTTCCATGGACAGAAGAAGAGCACCGAACATTCCTTGTTGGACTTGAGAAGCTTGGAAAAGGAGACTGGAGGGGTATCTCTAGAAACTATGTGACAACAAGAACCCCAACTCAAGTTGCTAGCCATGCTCAGAAGTATTTTATCAGACTGGCAACCATTAATAATAAGAAGAGACGTTCTAGTCTTTTTGACTTGGTTGGTAGCAGCAGCACAAAAACACCATCTCATCCAATTAGCAGCAAGTCAGTTTCTACTCATCAACAAGAATGTGAAGTTGAGAAGGAAGCTACTTTGTCACTGCTAGGGCGCCTAACCTCATCTCAACAAGAAACCAAATCAGATGAACAGAAAACTGGTGATAATTATTCTCAAATTCAAGCAGCTGCACAACAGGAAACTATGTTTCATTCCCAGACACCAAACGCAGCAGTGCCTGATCTGGAGCTCACTCTTGCAGTCTCCAAGGCTAAATCATCCCCGGGTTCCTTCCTTCTTGGGCCAATCAGTGTCACTTAA 795 0.4327 MGRKCSHCGNIGHNSRTCTSFRGSFVGVRLFGVQLDISSSCFPMKKSFSMDSFPSSSSPSSSFSSSRIAIDDRNSIGYLSDGLIVGAQERKKGVPWTEEEHRTFLVGLEKLGKGDWRGISRNYVTTRTPTQVASHAQKYFIRLATINNKKRRSSLFDLVGSSSTKTPSHPISSKSVSTHQQECEVEKEATLSLLGRLTSSQQETKSDEQKTGDNYSQIQAAAQQETMFHSQTPNAAVPDLELTLAVSKAKSSPGSFLLGPISVT* 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00034 264 ProSiteProfiles SANT domain profile. 96 144 IPR017884 -
Rops5g00034 264 PANTHER TRANSCRIPTION FACTOR KUA1 3 229 - -
Rops5g00034 264 MobiDBLite consensus disorder prediction 158 179 - -
Rops5g00034 264 SMART sant 92 142 IPR001005 -
Rops5g00034 264 ProSiteProfiles Zinc finger CCHC-type profile. 3 20 IPR001878 GO:0003676|GO:0008270
Rops5g00034 264 FunFam transcription factor MYB1R1 94 145 - -
Rops5g00034 264 ProSiteProfiles Myb-like domain profile. 88 140 IPR001005 -
Rops5g00034 264 MobiDBLite consensus disorder prediction 158 182 - -
Rops5g00034 264 CDD SANT 95 140 IPR001005 -
Rops5g00034 264 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 88 144 IPR017930 -
Rops5g00034 264 SUPERFAMILY Homeodomain-like 89 144 IPR009057 -
Rops5g00034 264 Gene3D - 94 147 - -
Rops5g00034 264 Pfam Myb-like DNA-binding domain 95 140 IPR001005 -
Rops5g00034 264 NCBIfam myb-like DNA-binding domain, SHAQKYF class 91 142 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00034 Rops-Chr5 854899 856401 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Rops5g00034 Myb_DNA-binding 1.8e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00034 - - gmx:778052 285.034