Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00019 ATGAAGACGCAACCTCAGCCTGACGGTGCCTCCGCCACACCTAATCCCTGCGAAGGGGTAGAGAAGAAGAGCATAAACCCGGAGCTATGGCAAGCTTGTGCGGGGCCGTTGGTCAACCTTCCTCCGGCTGGGACTCACGTTATTTACTTCCCTCAAGGCCACAGCGAACAGGTTGCAGCGTCTTTGAAGAAAGATGTGGATGCCCAAATTCCCAACTATCCCTCTCTTCCCTCTAAGTTACTCTGTCTCCTTCACAATGTCACCTTGCATGCTGATCCTGAAACGGATGAAGTATATGCTCAGATGACACTTCAACCAGTTCCTTCTTTTGACAAGGATGCTTTATTAAGATCAGATCTTGCTCTCAAGTCAAGTAAGACACAGCCTGAGTTTTTCTGTAAACAACTCACGGCAAGTGATACAAGTACTCATGGAGGTTTCTCTGTACCTCGCCGTGCAGCTGAGAAGATTTTCCCTCCTCTTGATTATTCTATGCAACCTCCTGCTCAAGAACTTGTGGCTAGGGACCTGCATGATACTGTTTGGACATTCCGACATATATACCGTGGGCAACCAAAACGTCACTTGCTTACAACTGGATGGAGTCTATTTGTCAGTGGAAAGAGGCTTTTTGCCGGAGACTCTGTTTTATTTATAAGAGATGAAAAGCAGCAGCTTCTTTTGGGTATCAGACGAGCTAACAGGCAACCCACTAATATATCATCCTCAGTACTATCAAGTGATAGTATGCACATTGGAATTCTTGCTGCTGCAGCTCATGCTACTGCAAACAATAGTCCTTTCACCGTCTTTTATAATCCCAGGGCTAGTCCCTCTGAATTTGTTATTCCTTTAGCCAAGTACTACAAGGCAGTGTACACTCACCAAATATCACCTGGCTTGCGTTTCCGAATGATGTTTGAAACTGAAGACTCGGGAACAAGAAGGTATATGGGTACAATTACAGGTATCAGTGACCTGGATCCTGTGAGATGGAAAAACTCTCAATGGCGTAATTTGCAGGTTGGTTGGGATGAGTCAACTGCTGGAGAAAAGCGTAGCAGGGTCTCAATCTGGGAAATTGAACCTGTGACTGCTCCTTTTTTCATCTGTCCTTCTCCATTCTTTAGATCTAAGAGGCCAAGACAACCGGGACTGCCTGATGATGAATCATCTGATTTTGATAACCTTTTCAAGCGGACAATGCCTTGGCTTGGTGATGATATGTGCATGAAGGATCCCCAAGGTCTCCCTGGTATGAGCTTAGTTCAATGGATGAACATGCAGCAAAATCCTGCACTGGCTAGCTCATTGCAGCCAAATTATGGTCCTTCCTTATCAGGATCTGTTTTGCAAAATCTTCCTGGTGCTGATATTTCCCGTCAGTTGGGATTTTCTGCTCCACAAATTTCTCAGTCAAACAATTTAGCCTTCAATGCTCAGAGGCTACTTCAGACTGCACAACAACTGGATCACCTTCAGAAGCTACCATCCACTTCTAACTCATTGGGAAATGGCCTGCAGCCACAACAACAGTCAGCTGATATCACTCAACAACCAAGGCAGAACTTGGCAAATCAAACTCTTCCACAGAGTCAAGTTCAGGCCCAACTCCTGCATCCCCAGAATCTTGTCCAAGCCAACAATATTCAACAGCAACAACCATCCATTCAAAACCATCAACTCCACAGAAGCCTCACTCAGAACCCATCACAGCAGCAGCAGACATTTACGGGTCAGAATCAACAACAAAGTTTGCTCCAATATCCCATGCCTGATCATCATCAACAGTTACAGATGTCTGATAATCAGTTTCAGTTGTTACAGAAGCTTCAACAACAAAAACAAATGCTCTTGGCACAGCAATCGGCACTGCAGCAGCCTACTCAACTTGCCCAAATACAGGATCAGCAGAGGCAGCTTTTAGATAAAACACAGAGCTTATCTAGAGCACCAACACCTGGTCAAGTGATGGAAATTCCTCCTATACTTCAGAATTCTATCCCTGAGGCTAATTCTATCACACATCAGATGACAAAGGCCAATGGCCAGAACAATATTCAATTTTCTCATCTGCCTCAGCAGCCAAAACTTCAACAGCAGCAACCTGGCTTGCTGTCTGAAATGTCTGGTCACATGGCACTTCCCCCTATCCCTACTACCAACCAGCTCTCTGCTGCCGGCAGTAGTATACTTACTGGAGCAGCTGGTGCAGGGCAATCTGTAATTACTGATGATGTTCCATCTTGTTCCACCTCACCTTCTACAAATAACTGTGCCAATGCACTTCCACCTTTGATAAATTCTCGATTCCATAAAAGCACCATATTAGGGGATGACATGGCTCAATCTGCTGCCACAATCTTGAGTTCAAGTGCCTTAGAAACCATGCCATCAAATGCAAACTTGTTAAAAGATTTACAGCTAAAGTCTGAAGTTAAGCCTTCTCTCAACATTTCCAAAAGTCAGAATCAAGGGAGTTTTGGTGCTCAGACACACTTGAATAGTGGTGCTGTCCAGACAGATTATCTGGATACATCATCTTCTACAACATCAGTTTGTCTATCTCAGAGTGACGCTCATATGCATCAGAGCAACAATCCATTATCTTACAATCCACAGTCTATGATGTTTAGAGACAATTGTCAAGATGGGGATGTTCAGGCAGATGCTAAGAGCAATATTCCATATGGCAATAACGTTGATAGCCAAATGGGAATGCCACTGACTGCAGATTCCCTTATAACCAAAAGCACATTGGGGCTGGGGAAGGATTCGTCTAATATTTTTTCTTCAGGAGGCATGCTTGGTAACTATGAAAGTAACAGAGATGCTCAGCAGGAACTTTCATCGTCGATGGTTTCACAGTCATTTGGGGTCCCTGATATGACCTTTAATTCAATTGATTCCACAATAGATGATAGTGGCTTCTTAAATAGGGGTTCATGGGCTGCACCACTGCCACCGCCACCGCTGCCTGCAGCACAGTATCAGCGGTTGAGGACATATACCAAGGTATATAAACGGGGAGCTGTGGGAAGGTCCATAGATATAACAAGGTATTCAGGTTACGAGGAGCTTAAACAGGATCTAGCTCGAAGGTTTGGCATAGAGGGACAGTTGGAGGATCGGCAAAGGATAGGTTGGAAACTTGTCTATGTAGATCATGAGGGTGATGTTCTACTAGTGGGAGATGACCCTTGGGAGGAGTTTGTCAACTGCGTGCGCTGTATTAAAATACTTTCTCCTCAAGAAGTGCAACAGATGAGCTTGGATGGAGATTTTGGCAATGGTGGCCTTCCAAATCAAGCCTGTAGCAGCTCTGACGTTATTATGCCATTGGGGACGTGTGTGTCCTGCATCAGGACTTCAAAGTGA 3378 0.4479 MKTQPQPDGASATPNPCEGVEKKSINPELWQACAGPLVNLPPAGTHVIYFPQGHSEQVAASLKKDVDAQIPNYPSLPSKLLCLLHNVTLHADPETDEVYAQMTLQPVPSFDKDALLRSDLALKSSKTQPEFFCKQLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQELVARDLHDTVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFIRDEKQQLLLGIRRANRQPTNISSSVLSSDSMHIGILAAAAHATANNSPFTVFYNPRASPSEFVIPLAKYYKAVYTHQISPGLRFRMMFETEDSGTRRYMGTITGISDLDPVRWKNSQWRNLQVGWDESTAGEKRSRVSIWEIEPVTAPFFICPSPFFRSKRPRQPGLPDDESSDFDNLFKRTMPWLGDDMCMKDPQGLPGMSLVQWMNMQQNPALASSLQPNYGPSLSGSVLQNLPGADISRQLGFSAPQISQSNNLAFNAQRLLQTAQQLDHLQKLPSTSNSLGNGLQPQQQSADITQQPRQNLANQTLPQSQVQAQLLHPQNLVQANNIQQQQPSIQNHQLHRSLTQNPSQQQQTFTGQNQQQSLLQYPMPDHHQQLQMSDNQFQLLQKLQQQKQMLLAQQSALQQPTQLAQIQDQQRQLLDKTQSLSRAPTPGQVMEIPPILQNSIPEANSITHQMTKANGQNNIQFSHLPQQPKLQQQQPGLLSEMSGHMALPPIPTTNQLSAAGSSILTGAAGAGQSVITDDVPSCSTSPSTNNCANALPPLINSRFHKSTILGDDMAQSAATILSSSALETMPSNANLLKDLQLKSEVKPSLNISKSQNQGSFGAQTHLNSGAVQTDYLDTSSSTTSVCLSQSDAHMHQSNNPLSYNPQSMMFRDNCQDGDVQADAKSNIPYGNNVDSQMGMPLTADSLITKSTLGLGKDSSNIFSSGGMLGNYESNRDAQQELSSSMVSQSFGVPDMTFNSIDSTIDDSGFLNRGSWAAPLPPPPLPAAQYQRLRTYTKVYKRGAVGRSIDITRYSGYEELKQDLARRFGIEGQLEDRQRIGWKLVYVDHEGDVLLVGDDPWEEFVNCVRCIKILSPQEVQQMSLDGDFGNGGLPNQACSSSDVIMPLGTCVSCIRTSK* 1126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00019 1125 CDD B3_DNA 131 223 IPR003340 GO:0003677
Rops5g00019 1125 Gene3D - 296 367 - -
Rops5g00019 1125 ProSiteProfiles PB1 domain profile. 1001 1085 IPR000270 GO:0005515
Rops5g00019 1125 SUPERFAMILY CAD & PB1 domains 1015 1079 - -
Rops5g00019 1125 FunFam Auxin response factor 996 1090 - -
Rops5g00019 1125 MobiDBLite consensus disorder prediction 496 517 - -
Rops5g00019 1125 SMART B3_2 132 234 IPR003340 GO:0003677
Rops5g00019 1125 Pfam AUX/IAA family 1001 1086 IPR033389 -
Rops5g00019 1125 FunFam Auxin response factor 296 367 - -
Rops5g00019 1125 MobiDBLite consensus disorder prediction 1 21 - -
Rops5g00019 1125 Gene3D - 996 1090 - -
Rops5g00019 1125 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 21 616 IPR044835 GO:0003677|GO:0006355|GO:0009725
Rops5g00019 1125 Pfam B3 DNA binding domain 132 233 IPR003340 GO:0003677
Rops5g00019 1125 Pfam Auxin response factor 258 341 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Rops5g00019 1125 SUPERFAMILY DNA-binding pseudobarrel domain 121 261 IPR015300 -
Rops5g00019 1125 Gene3D - 130 233 IPR015300 -
Rops5g00019 1125 FunFam Auxin response factor 130 234 - -
Rops5g00019 1125 ProSiteProfiles B3 DNA-binding domain profile. 132 234 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00019 Rops-Chr5 631611 637729 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00019 14 474 B3 DNA Binding Superfamily AT1G19220 73.060 0.0 676
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Rops5g00019 B3 3.8e-19 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00019 - - ccaj:109803454 1827.37