Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00018 ATGGAACTTCAACGTTGGAAAGTGGAAGAACAAAAGAAGCTGGAAGAGGCACGAACAGCTGAAGAAGCTGCTATGTCACTTGTAGAGAAGGAGCAAGAAAAGAGTAGAGCTGCCTTGAAGGCGGCAGAAGCATCTCAGAGACTTGCGGCGTTGGAAGCACAAAAAAGGACGAATGCAGAGATGAATGGCGAAACAGAAGTATGTCAGAGGAAGATGAGAGAAGATCCTTATGCACGTGGCCCTGCCAGGTACAGAAGATACAGTATTGAGGAAATTGAAGAGGCAACAAAAGGCTTTTCGGACTCTCTCAAGATTGGTGAAGGAGGTTATGGTCCCGTATTCAGGTGTGAACTGGATCACACACAGGTTGCAATAAAAGTTTTGAAATCAGATGCAGCTCAAGGACGGGCACAGTTTCAGCAGGAAGTTGAAGTGTTGAGTAGCATAAGGCATCCACATATGGTTCTCCTGCTTGGAGCATGCCCAGAATATGGTTGCTTAGTGTATGAGTACATGGCCAATGGAAGCTTGGATGATTGCCTCTTCCGGAGAGGTAAATCACCACCTCTTCCGTGGCAGCTAAGATTCCAAATTGCTGCAGAGATAGCCACGGGACTCCTTTTCCTTCACCAGACAAAACCAGAGCCACTGGTGCACCGTGACTTGAAACCAGGCAACATTTTGCTTGACCGCAACTATGTGAGCAAGATTGGTGATGTGGGGTTGGCAAGGCTTGTCCCTCCTACGGTTGCAGACACTGTGACTCAGTATCGCATGACATCAACTGCTGGAACTTTCTGTTACATTGATCCTGAGTACCAGCAAACTGGCATGCTTGGAATCAAATCTGATATTTACTCACTTGGGATCATGCTTCTACAAATGGTAACAGCCAAGCCCCCAATGGGTTTGACTCATCATGTGGGAAGATCCATTGAGAAAGGGACTTTTGCTGAGATGCTTGACCCAGCTATTGATGACTGGCCAATGGATCACACCTTGCATTTCGCCAAACTTTCCCTCCAATGTGCTGAAATGAGGAGAAAAGATAGACCTGATCTTGGAAAAGTTGTATTGCCTGAGCTCAATAAACTTAGAGCATTTGCTGAAGAAAACATGCCTATGATGATGATGTTTGGAGGTAGAGCAGGATTCAATCCCAGAAGTAGCAACACTTCCATACATTCCACGGTTTCCACAAGTCAGGTGAGTCATTCGTTATCCTTGATCAGATGA 1236 0.4595 MELQRWKVEEQKKLEEARTAEEAAMSLVEKEQEKSRAALKAAEASQRLAALEAQKRTNAEMNGETEVCQRKMREDPYARGPARYRRYSIEEIEEATKGFSDSLKIGEGGYGPVFRCELDHTQVAIKVLKSDAAQGRAQFQQEVEVLSSIRHPHMVLLLGACPEYGCLVYEYMANGSLDDCLFRRGKSPPLPWQLRFQIAAEIATGLLFLHQTKPEPLVHRDLKPGNILLDRNYVSKIGDVGLARLVPPTVADTVTQYRMTSTAGTFCYIDPEYQQTGMLGIKSDIYSLGIMLLQMVTAKPPMGLTHHVGRSIEKGTFAEMLDPAIDDWPMDHTLHFAKLSLQCAEMRRKDRPDLGKVVLPELNKLRAFAEENMPMMMMFGGRAGFNPRSSNTSIHSTVSTSQVSHSLSLIR* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00018 411 Gene3D Transferase(Phosphotransferase) domain 1 172 385 - -
Rops5g00018 411 PANTHER OS02G0152300 PROTEIN 1 379 - -
Rops5g00018 411 ProSiteProfiles Protein kinase domain profile. 99 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops5g00018 411 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 67 171 - -
Rops5g00018 411 Gene3D Phosphorylase Kinase; domain 1 69 171 - -
Rops5g00018 411 SUPERFAMILY Protein kinase-like (PK-like) 77 358 IPR011009 -
Rops5g00018 411 FunFam U-box domain-containing protein 51 172 372 - -
Rops5g00018 411 ProSitePatterns Serine/Threonine protein kinases active-site signature. 217 229 IPR008271 GO:0004672|GO:0006468
Rops5g00018 411 Pfam Protein kinase domain 102 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops5g00018 411 Coils Coil 3 54 - -
Rops5g00018 411 SMART serkin_6 99 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00018 Rops-Chr5 628057 630045 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00018 2 405 Receptor kinase-like Gene Family AT5G35380 68.227 0.0 525
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Rops5g00018 Pkinase 3.7e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00018 - - gmx:100803837 629.787