Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00017 ATGGCACTCATCAGTGGTTTAACGCCTTGCTTGTTCATCTTTTTATTTCATCTTGTTCCCTCTTCAGAAACAGAAACAGATTCGCTCCTCAAGTTCAAGGAGTCCCTCCAAAACAGCGATGGATTATCCTCATGGAATGCATCAGTTTCAGGACCTCCATGCACAGATGATCAAGCCCATTGGCATGGCATTCTGTGCTATAAAGGACATATATGGGGCTTGAAGCTTGAGAATATGAAGCTCAAGGGGACCATTGATGTGAACTCCCTCAAGGATTTCCCATATCTCAGAACCTTAAGCTTCATGCACAATGATTTTGACAGCACATGGCCTGAGATAAACAAGCTAGTAGGTCTGAAGTCCATTTACCTCTCACATAATAAGTTTTCCGGGGAGATTCCTGCCAAGGCTTTTCAGCGTATGCAATGGTTGAAGAAAATTTATTTGTCAAACAACCATTTTACAGGTGCTATTCCAACTTCGCTTACTTCCTTGCCTAGGCTTATGGATTTGAAGTTGGAGGGAAACCAATTCAGTGGCCCCATTCCTAATTTTAAGGAAAAATTGAGATCATTTAGCGTAGCTAATAATCAATTAGAGGGACAAATACCAGCCAGCCTCAGTAAGATGCCAGCTTCATCTTTTTCTGGCAATGAAAGGCTGTGTGGAGCCCCGTTAGGTGCATGCTCCTCCAAAAAGAAATCAACTGTCAGTGTTATTGTGGTTGTGGTTCTTGTTATTGTGGCACTGATTGTGATTGGAGCGGTAATATTATTGTTCCTTCGTCGAAGAAGAAAACAAGGAGCTGAAGCGTCTAGGGAAAATGGACCTTCCAACTCCAACCTCCAAAAGAATGGAAGAGGACCAAGTGAATGGTCAGAGGAGGGGAGTCATAGGTCATCAAGGTCCCAAACCTCCAGCAACTTCAAAAAAGGAGACATGAGGTTATCCTTTGTGAGGGATGACAGAGAGCAATTTGATTTGCAAGAACTGCTGAGAGCCTCTGCTGAGATATTGGGTAGTGGTTGTTTCAGTTCTTCCTACAAGGCTGCTTTGTTAAATGGCCCAACCATGGTGGTGAAGAGATTCAAGCAAATGAACAATGTTGGGAGTGAAGAGTTTCAGGAGCACATGCGAAGGCTAGGAAGGTTGAATCATCCTAATCTGCTTCCTCTCGTGGCTTTCTACTACAGAAAAGAGGAGAAGCTCTTGGTTACCGACTTTGTTCAGAATTGCAGCTTGGCTGTTCGCCTTCACGGATACCAAGCTCTGGGGCAACCAAGCCTTGATTGGCCAACCCGGTTGAAGATTGTGAAAGGCATAGCAAAAGGTCTTGAATATCTGTACAAGGAGATGCCAGGCCTAATTGCACCCCATGGACATCTTAAGTCCTCCAACGTTCTTCTGAGTGAGTTTTTGGAGCCAATCCTCAATGACTATGGGTTGGTACCAGTGATAAACCAGGATCTTGCTCCTGACATCATGGTGATCTACAAGTCCCCAGAGTATTTGCAGCATGGCCGTATTACAAAGAAGACTGATGTGTGGAGTTTTGGGATAATGATTTTGGAGATTCTTACTGGCAAGTTCCCTGCTAACTTTCTACAACAAGGTAAAGGAAGCGAGTTGAGTATAGCTAATTGGGTGGATTCGGTTGTCCCAGAAGAATGGAGTAGTGAGGTGTTTGATAAAGACATGATGGGGGCAACCAGAAACAGTGAGGGGGAGATGACGAAGCTTTTGAAGATTGCATTATCTTGTTGTGAAGCGGATGTGGAAAAGAGATGGGATTTGAAAGAAGCTGTAGACAAAATTCAAGAGATAAAAGAAAGAGATCATGATGAGGATTTCTATTCTTCTTATGCTAGTGAAGCTGACATGAAGTCTTCTAAGGCTTTGTCAGATGAAGTTAGTTTTAACATAAATGGTGAGGCTTAA 1938 0.4329 MALISGLTPCLFIFLFHLVPSSETETDSLLKFKESLQNSDGLSSWNASVSGPPCTDDQAHWHGILCYKGHIWGLKLENMKLKGTIDVNSLKDFPYLRTLSFMHNDFDSTWPEINKLVGLKSIYLSHNKFSGEIPAKAFQRMQWLKKIYLSNNHFTGAIPTSLTSLPRLMDLKLEGNQFSGPIPNFKEKLRSFSVANNQLEGQIPASLSKMPASSFSGNERLCGAPLGACSSKKKSTVSVIVVVVLVIVALIVIGAVILLFLRRRRKQGAEASRENGPSNSNLQKNGRGPSEWSEEGSHRSSRSQTSSNFKKGDMRLSFVRDDREQFDLQELLRASAEILGSGCFSSSYKAALLNGPTMVVKRFKQMNNVGSEEFQEHMRRLGRLNHPNLLPLVAFYYRKEEKLLVTDFVQNCSLAVRLHGYQALGQPSLDWPTRLKIVKGIAKGLEYLYKEMPGLIAPHGHLKSSNVLLSEFLEPILNDYGLVPVINQDLAPDIMVIYKSPEYLQHGRITKKTDVWSFGIMILEILTGKFPANFLQQGKGSELSIANWVDSVVPEEWSSEVFDKDMMGATRNSEGEMTKLLKIALSCCEADVEKRWDLKEAVDKIQEIKERDHDEDFYSSYASEADMKSSKALSDEVSFNINGEA* 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00017 645 FunFam Pollen receptor-like kinase 1 409 619 - -
Rops5g00017 645 MobiDBLite consensus disorder prediction 269 309 - -
Rops5g00017 645 Pfam Leucine rich repeat N-terminal domain 23 66 IPR013210 -
Rops5g00017 645 SUPERFAMILY L domain-like 23 215 - -
Rops5g00017 645 SUPERFAMILY Protein kinase-like (PK-like) 337 609 IPR011009 -
Rops5g00017 645 Gene3D Transferase(Phosphotransferase) domain 1 409 621 - -
Rops5g00017 645 FunFam Nuclear pore complex protein NUP107 22 184 - -
Rops5g00017 645 Gene3D Ribonuclease Inhibitor 21 186 IPR032675 -
Rops5g00017 645 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 11 612 IPR046959 -
Rops5g00017 645 FunFam pollen receptor-like kinase 1 302 408 - -
Rops5g00017 645 Pfam Leucine rich repeat 118 178 IPR001611 GO:0005515
Rops5g00017 645 ProSiteProfiles Protein kinase domain profile. 333 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops5g00017 645 Pfam Protein tyrosine and serine/threonine kinase 337 604 IPR001245 GO:0004672|GO:0006468
Rops5g00017 645 Gene3D Ribonuclease Inhibitor 189 229 IPR032675 -
Rops5g00017 645 MobiDBLite consensus disorder prediction 272 290 - -
Rops5g00017 645 Gene3D Phosphorylase Kinase; domain 1 297 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00017 Rops-Chr5 621211 624146 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00017 7 639 Receptor kinase-like Gene Family AT5G35390 50.683 0.0 641
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Rops5g00017 PK_Tyr_Ser-Thr 5.7e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00017 - - gmx:100804368 855.514