Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g02421 ATGTTGGTTATCTCTTTCGATCAAAAGGCAAGAACACCACCTTCCTTGTTTTCCTTTCTGCGTTGTGCCATCCCATTGTCCTGGAAGATGCACCACAACCTCGCAAGGTTAAGGTTGTGGATTGCTTTGCTTGCGGTCTCAACCACCGCGGTTCATTGCAAAACTGCCTCCCAAGATGTTTCAGCTCTTAATGTGATGTTCACCAGCTTAAATTCGCCTTCACAACTCAGTGGCTGGAAATCCAGTGGAGGTGATCCTTGTGGCGACTCCTGGGAAGGAATCAAATGCTCAGGATCATCTGTCACAGAAATAAATTTATCGGACCTTGGACTTACTGGATCAATGGGCTACCAGTTGTCGAGCTTAACATCAGTTACCTCCTTTGATTTGAGCAGCAACAACCTCAAGGGTGATATACCGTATCAACTTCCTCCAAATGCTCGTTACATCGATCTTTCGAAGAATGGCTTCACTGGAAGTGTACCTTATTCAATTTCTCAGATGAGCGACCTCAACCAACTAAACCTTGCACATAATCGGCTCAATAACCAGTTGGGCGATATGTTTGGGAACCTTAAGAAACTCAAACAACTGGATTTATCATCCAATTCACTATCAGGAAACCTGCCTCGGAGTTTTAAATCACTTGCAAGCCTAAAGAAGTTGCATCTGCAAGACAATAAATTCTCTGGTTCAATAAATGTCCTAGCCAACCTTCCACTTGAAGATTTGAATGTTGAAAATAACAAATTTACTGGTTGGATCCCCGAGGAGTTAAAGGATATAGATAATTTGGAAACTGGAGGAAACTCTTGGTCAACTGGGCCAGCACCTCCTCCTCCTCCTGGGACACCTCCTATCGAGCATTCTGAGAAAAAGAATAAAAAATCCGTTGTTAGTGGTGTAGCTATAGCAGGCATAACTTTTGGCGTGCTGGCAGTAATTATAACCGTTGTTGCTCTTTCTAAAAGAAGAAGGTCATCTTTACCTTCTTCACATTTTATCGATGAAGAGAGGAACAGCCAGACCCCCTTTGCATCTCAGGAGTTATCCAAAGATTTTGGTGTTGATATCAACAAAGAATACAAAGGATTTAAGTCACTGGATTCTACTTCAATTGACATAAAGGCTTTGCAAAAATCTCCATCAATTGGTGTTAGATCATCAGTCTCTGATTGTGTGCAATCCTTTAATGACAATGAGTTTGCAAATCGTCTAAATGCTAGAAGAAGCACATCAATGCGTTGTTCTCCTTTTTCATTGGCAGAGTTGCAGACTGCTACTGCTAATTTTGCCTCAGGTCGACTGCTTGGTGAAGGATCCATTGGACGTGTTTATCGAGCCAAATATGCTGATGGAAAGGTATTGGCTGTGAAAAAAATCAACCCTTCACTTTTTAATGGTGGTCGTCCTGAGGAATTCTCTCGGATTGTTTCAAACATCTGCAAACTTCATCATCCAAATATTGCTGATCTAGTTGGTTATTGTTCAGAACAGGAGCACATGTTAATATATGATTATTTCAGAAACGGCTCTCTCCACGACTTTTTACACTTATCAGATGACTTCAGCAAACCACTAACTTGGAACACCAGAGTCAGAATTGCATTGGGAACCGCTCGGGCTGTCGAGTACCTGCATGAAATTTGTTCTCCACCTTCAGTTCACAAGAATATCAAGTCCTCCAATATTTTGCTTGACACGGATCTGAATCCCCGTCTCTCAGACCATGGTTTGGCATCCTTCCACCAGAGGGAGGCGTGCAACGACGACGGTGATGAAGCAGCGAGAAGTATGCGGGCGACGGTGACGAAGCAGGGAAAGGAAGTGTTCGACAATGACGAACCAGAGGGCCATGTCATGCGTGGGATGGTGACGAACCAGAGGGACTTGTGCGATGACAGCTTCGGCGATGGGAGGCGGGCGGAAACGGCGGCTAGGGTTTTAAGATTTAAATAA 1959 0.437 MLVISFDQKARTPPSLFSFLRCAIPLSWKMHHNLARLRLWIALLAVSTTAVHCKTASQDVSALNVMFTSLNSPSQLSGWKSSGGDPCGDSWEGIKCSGSSVTEINLSDLGLTGSMGYQLSSLTSVTSFDLSSNNLKGDIPYQLPPNARYIDLSKNGFTGSVPYSISQMSDLNQLNLAHNRLNNQLGDMFGNLKKLKQLDLSSNSLSGNLPRSFKSLASLKKLHLQDNKFSGSINVLANLPLEDLNVENNKFTGWIPEELKDIDNLETGGNSWSTGPAPPPPPGTPPIEHSEKKNKKSVVSGVAIAGITFGVLAVIITVVALSKRRRSSLPSSHFIDEERNSQTPFASQELSKDFGVDINKEYKGFKSLDSTSIDIKALQKSPSIGVRSSVSDCVQSFNDNEFANRLNARRSTSMRCSPFSLAELQTATANFASGRLLGEGSIGRVYRAKYADGKVLAVKKINPSLFNGGRPEEFSRIVSNICKLHHPNIADLVGYCSEQEHMLIYDYFRNGSLHDFLHLSDDFSKPLTWNTRVRIALGTARAVEYLHEICSPPSVHKNIKSSNILLDTDLNPRLSDHGLASFHQREACNDDGDEAARSMRATVTKQGKEVFDNDEPEGHVMRGMVTNQRDLCDDSFGDGRRAETAARVLRFK* 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g02421 652 Pfam Protein tyrosine and serine/threonine kinase 434 587 IPR001245 GO:0004672|GO:0006468
Rops4g02421 652 SUPERFAMILY L domain-like 56 266 - -
Rops4g02421 652 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 102 585 - -
Rops4g02421 652 Pfam Leucine rich repeat N-terminal domain 57 97 IPR013210 -
Rops4g02421 652 Gene3D Phosphorylase Kinase; domain 1 390 507 - -
Rops4g02421 652 ProSiteProfiles Protein kinase domain profile. 431 652 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops4g02421 652 Gene3D Ribonuclease Inhibitor 54 281 IPR032675 -
Rops4g02421 652 MobiDBLite consensus disorder prediction 265 294 - -
Rops4g02421 652 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 56 283 - -
Rops4g02421 652 Gene3D Transferase(Phosphotransferase) domain 1 508 628 - -
Rops4g02421 652 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 396 507 - -
Rops4g02421 652 SUPERFAMILY Protein kinase-like (PK-like) 411 585 IPR011009 -
Rops4g02421 652 Pfam Leucine rich repeat 187 229 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g02421 Rops-Chr4 51349167 51358625 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g02421 37 589 Strubbelig Receptor Gene Family AT1G78980 60.247 0.0 659
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Rops4g02421 PK_Tyr_Ser-Thr 2.2e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g02421 - - gmx:100785529 862.448