Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g02394 ATGGCATGCTTTATAAATCGAAATCTAAGCATGGAAGATTGTGATCAAGTCACCAAATCTGAGCAAACTGAACAAGTGTGTAGTTTCTTCAGAAAACCTGTTAATAAGAAGAATATTAGAAAACGCACTGTTGATAATGAAGATGATGATGAGGACTCAAACAAGGAAAGCTCTTTGCTTCATATTCAGAAAAAGACGTCGAAGCCTGATAGTAAGTTGTTCTTTTCAACCGGCTCTTCAAAAAGCTCTGCATCTGCTGAGCCAAGTGAAGAACCAGGGAAACCAGTCTTTCAGTTTGAGTCTTCAAAAGAGATTCAAGTTCAACATGATAGCAAAGCAACAGCAACTCTAGAGACTGAGACTGACTTTTTGAGAGATTCTCGAGCCATCCGTGAAAGGGCTCTTAAGCAAGCAGCGGAGAGTTTGAAGGGGAAAGGCACAAGTTCTGAGGATGAGAAGTTATACAAGGGAATCAACAGTTACAAAGACTACAAGGCTGGCTTTCGTAGAGAGCAAACCATTGCCAGTGAAAAAGCTGGTGGGGCGCATGGTCCTCTTAGGGCTTCGGCTCATATAAGAGTTTCAGCAAGATTTGATTATCAGCCTGACATATGTAAGGATTATAAGGAAACTGGTTACTGTGGGTATGGTGATGCATGTAAGTTTATGCATGATCGAGGGGATTACAAGCCTGGGTGGCAGTTGGAGAAGGAATGGGAAGAAGCTGAGAAAGCAAGGAAGATGAGATTGGCTGCAGGTGAGGATACGGATGAGGAGGGTGCTAATTTGGCTGATGAAGAAGATGATGATTCATTACCATTTGCATGTTTCATTTGTAGAAAGCCATTTGTGGATCCTGTTGCAACCAAGTGCAAGCACTACTTCTGCGAGCATTGTGCATTAAAGCATCATGCGAAGAATAAGAAGTGTTTTGTCTGCAACCAGCCAACACTTGGCATTTTTAATGTCGCTCACGAGATACGCAAGAAGATGGCTGAGGATAAATAA 1008 0.4216 MACFINRNLSMEDCDQVTKSEQTEQVCSFFRKPVNKKNIRKRTVDNEDDDEDSNKESSLLHIQKKTSKPDSKLFFSTGSSKSSASAEPSEEPGKPVFQFESSKEIQVQHDSKATATLETETDFLRDSRAIRERALKQAAESLKGKGTSSEDEKLYKGINSYKDYKAGFRREQTIASEKAGGAHGPLRASAHIRVSARFDYQPDICKDYKETGYCGYGDACKFMHDRGDYKPGWQLEKEWEEAEKARKMRLAAGEDTDEEGANLADEEDDDSLPFACFICRKPFVDPVATKCKHYFCEHCALKHHAKNKKCFVCNQPTLGIFNVAHEIRKKMAEDK* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g02394 335 MobiDBLite consensus disorder prediction 40 95 - -
Rops4g02394 335 SUPERFAMILY CCCH zinc finger 198 231 IPR036855 GO:0046872
Rops4g02394 335 ProSitePatterns Zinc finger RING-type signature. 291 300 IPR017907 -
Rops4g02394 335 MobiDBLite consensus disorder prediction 40 68 - -
Rops4g02394 335 ProSiteProfiles Zinc finger C3H1-type profile. 199 227 IPR000571 GO:0046872
Rops4g02394 335 MobiDBLite consensus disorder prediction 69 87 - -
Rops4g02394 335 CDD RING-HC_RNF113A_B 269 322 - -
Rops4g02394 335 FunFam RING finger protein 113A 274 333 - -
Rops4g02394 335 Gene3D - 197 231 - -
Rops4g02394 335 Pfam Zinc finger, C3HC4 type (RING finger) 275 317 - -
Rops4g02394 335 SMART c3hfinal6 199 226 IPR000571 GO:0046872
Rops4g02394 335 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 200 225 IPR000571 GO:0046872
Rops4g02394 335 SUPERFAMILY RING/U-box 275 318 - -
Rops4g02394 335 PANTHER ZINC FINGER PROTEIN 183 21 335 IPR039971 -
Rops4g02394 335 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 274 333 IPR013083 -
Rops4g02394 335 SMART ring_2 276 313 IPR001841 -
Rops4g02394 335 ProSiteProfiles Zinc finger RING-type profile. 276 314 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g02394 Rops-Chr4 51026975 51029299 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g02394 22 335 C2H2 Transcription Factor Family AT1G01350 71.338 8.30e-169 471
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Rops4g02394 zf-C3HC4_3 1.5e-08 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g02394 K13127 - gmx:100787434 567.385