Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g02392 ATGGCTATCGGGAATGAAATGAAGCAACAAAAGGAGGAGTTCATTTTCAGGTCCAAGCTTCCAGATATCTACATTCCCAAACACCTTCCCCTGCATTCATATTGCTTTGAGAATCAATCAGAGTTTGGATCACGTCCCTGTTTGATCAATGCCCCAACGGGAGAAATCTACACCTACCATGACGTGGAGCTCACGGCACGAAGAGTTGCCTCCGGCCTCCACAAACTGGGTGTCCAACAAGGTGAGGTGATCATGGTCCTTCTCCCCAATTCTCCAGAATTTGTGTTTGCTTTTCTGGGTGCTTCTTTTCGTGGTGCCATCACCACTGCTGCCAACCCTTTCTTCACACCAGCTGAGATTGCTAAACAAGCAAAAGCTTCCAATACCAAGTTGGTCATAACTCAAGCTAGTTACTATGGGAAGGTGAAGGATTTGGATGTGAAGCTGGTGTTCGTTGATTCTCCCCCAGAGGGAGAGGGGCACATGCATTTCAGTGAGCTGTCTCAGGCTGATGACGAGAATGAAATGCCGGAGGTGAAGATCAACCCCGATGATGCGGTGGCACTGCCTTATTCTTCAGGGACAACGGGGCTCCCAAAAGGGGTTATGCTGACACATAAAGGTTTGGTCACTAGCATAGCACAGCAAGTGGATGGAGACAACCCAAACCTTTACTACCACTCTGAGGATGTCATACTATGTGTGCTTCCCTTGTTTCACATCTACTCTCTCAACTCTGTTTTGCTCTGTGGCTTGAGAGCCAAAGCTGCCATTTTGTTGATGCCAAAGTTTGATATTCATGCCCTTCTGGCTCTCATTCCCAAATATAAAATTAGCATCGCCCCTGTTGTGCCACCCATTGTTTTGGCCATCGCCAAGTCCCCTGATCTTGATAACTATGACCTCTCCTCCATCAGGGTCTTGAAATCTGGAGGGGCTCCTCTTGCCAAAGAACTTGAAGACACTGTCAGGGCCAAATTCCCCAAAGCCAAACTTGGACAGGGATATGGGATGACGGAGGCAGGTCCAGTATTGACAATGTGCTTATCATTTGCTAAAGAGCCGATAGATGTAAAACCAGGTTCATGTGGAACCGTCGTCAGAAATGCAGAGTTGAAGATTGTTGATCCTGAAACTGATAATTCCTTGCCTCGAAATCAACCTGGTGAAATTTGTATTAGAGGCGACCAAATCATGAAAGGTTATCTAAACGACCCGGAGGCTACTAAGAGAACTATAGACAAAGAAGGTTGGTTGCACACGGGTGATATTGGGTACGTGGACGATGATGATGAGTTGTTCATCGTTGATAGGCTGAAGGAATTGATTAAATACAAAGGATTTCAAGTGGCTCCAGCTGAACTCGAAGCCCTTATTCTCTCCCATCCTAAGATCACTGATGTTGCTGTAGTCCCGATGAAGGATGAAGCAGCTGGTGAGGTCCCAGTTGCATTTGTGGTGAGATCAAATGGTCATACAGACACAACTGAGGATGAAATTAAACAATTCGTCTCAAAACAGGTGGTGTTTTACAAAAGAATAAACAGAGTATTCTTCATTGATGCCATTCCCAAGTCACCCTCAGGCAAAATATTACGAAAGGACCTGAGGGCTATGCTTGCCGCTGGGGTCCCCAATAATTGA 1644 0.4611 MAIGNEMKQQKEEFIFRSKLPDIYIPKHLPLHSYCFENQSEFGSRPCLINAPTGEIYTYHDVELTARRVASGLHKLGVQQGEVIMVLLPNSPEFVFAFLGASFRGAITTAANPFFTPAEIAKQAKASNTKLVITQASYYGKVKDLDVKLVFVDSPPEGEGHMHFSELSQADDENEMPEVKINPDDAVALPYSSGTTGLPKGVMLTHKGLVTSIAQQVDGDNPNLYYHSEDVILCVLPLFHIYSLNSVLLCGLRAKAAILLMPKFDIHALLALIPKYKISIAPVVPPIVLAIAKSPDLDNYDLSSIRVLKSGGAPLAKELEDTVRAKFPKAKLGQGYGMTEAGPVLTMCLSFAKEPIDVKPGSCGTVVRNAELKIVDPETDNSLPRNQPGEICIRGDQIMKGYLNDPEATKRTIDKEGWLHTGDIGYVDDDDELFIVDRLKELIKYKGFQVAPAELEALILSHPKITDVAVVPMKDEAAGEVPVAFVVRSNGHTDTTEDEIKQFVSKQVVFYKRINRVFFIDAIPKSPSGKILRKDLRAMLAAGVPNN* 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g02392 547 SUPERFAMILY Acetyl-CoA synthetase-like 14 542 - -
Rops4g02392 547 ProSitePatterns Putative AMP-binding domain signature. 189 200 IPR020845 -
Rops4g02392 547 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 10 538 - -
Rops4g02392 547 FunFam 4-coumarate--CoA ligase 2 441 543 - -
Rops4g02392 547 Pfam AMP-binding enzyme 38 445 IPR000873 -
Rops4g02392 547 Pfam AMP-binding enzyme C-terminal domain 454 530 IPR025110 -
Rops4g02392 547 CDD 4CL 25 536 - -
Rops4g02392 547 FunFam Long-chain-fatty-acid--CoA ligase FadD 17 440 - -
Rops4g02392 547 Gene3D - 440 543 IPR045851 -
Rops4g02392 547 Gene3D - 8 439 IPR042099 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g02392 Rops-Chr4 51006712 51010332 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g02392 2 508 Monolignol Biosynthesis Gene Families AT1G51680 70.000 0.0 721
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g02392 K01904 - gmx:547944 886.33