Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g02373 ATGTCAACTTCGACTAGATGTGCTGCTTGCAAATCTATGAGGAGAAAATGTCCACCAGATTGTGTGCTAGCACCATATTTTCCCCCATCCAATCCCGAGAGGTTTTCCTGTGCTCATAAAGTCTATGGCGCCAGCAATATTACCAGAATGTTACTGGAACTTCGGGAGGATTTTCGAGCTGAGGCTGCAGATTGCATGTGTTTCGAAGCGAGTTTACGTGTCAAGGACCCAGTTTATGGATGTGTTGGAATAATCTCTCAATTGCAACAAGAGATAATCCAAACTCAAAACGACATAATAAAGATCAAGGGTGAAATGACATTTCATAATGCACAGAGACAACAACAGCTGCAGGATCAGCAACAAATGGTTCATGCTAATGATCAAGGTGACCTAGCAGCATTTTCACCTATCAGTCCAATTGAACAGCAACCCAACCCCATTGTCTGTCAACGGCCTTTTGATGCCCCCACTTCTGCATTTTTCCATACATGA 495 0.4323 MSTSTRCAACKSMRRKCPPDCVLAPYFPPSNPERFSCAHKVYGASNITRMLLELREDFRAEAADCMCFEASLRVKDPVYGCVGIISQLQQEIIQTQNDIIKIKGEMTFHNAQRQQQLQDQQQMVHANDQGDLAAFSPISPIEQQPNPIVCQRPFDAPTSAFFHT* 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g02373 164 Coils Coil 85 105 - -
Rops4g02373 164 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 2 128 - -
Rops4g02373 164 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
Rops4g02373 164 Pfam Lateral organ boundaries (LOB) domain 6 100 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g02373 Rops-Chr4 50849526 50850329 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g02373 6 115 AS2 family AT3G26660 51.818 2.20e-42 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Rops4g02373 LOB 1.7e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g02373 - - qsu:112004481 179.489