Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g02371 ATGACGCCTGGCTCCAACGGCCACCACACCGTAACCATCGCTACCAGCCACCCTGACTCCGATGGCCTCCCTCCCTCCGACGACAACAACCACCACCAAGATGACGACGACGAACTCGATCCAGACGATCCTTTCGCCATTACGCAAACCAAGAATGCATCGCATGAGACCCTCAGGCGTTGGAGACAAGCAGCACTCGTGCTTAATGCATCCAGGCGTTTTAGATATACTCTGGACTTGAGAAAAGAAGAGGAGAAACAGGAAAAGAAAAGCTTGATTAGAGCCCATGCACAAGTCATAAGAGCAGCACTGCTTTTCAGGTTAGCCGGTGAACGTGAACTAGTGATAAGTGCAGCAGCGACGCCCCAAACTCCAGTTGGTGGTGACTATGCAGTTGGGCTCGAACAACTTGCTTCAATGTCTAAGGATCAGAATGTTTCTACTTTACGACAATATGGAGGGATTAAAGGCTTATCAAATTTACTAAAATCAAATCCGGATAAAGGAATTAGTGGTGATGATGCTGATGTATCAAAAAGGAAAAATGCATTTGGAACTAATACATATCCTCGGAAAAAAGGGAGAAGTTTCTGGAGGTTTTTATGGGAAGCTTGGCAAGATCTGACTCTCATAATATTGATTATAGCAGCTGCAGTGTCATTGGTACTTGGTATAAAAACAGAGGGTTTGGATGAAGGATGGTATGATGGGGGAAGCATCGCTTTTGCAGTTGTCCTTGTCATTGTAGTTACAGCTGTCAGTGATTATCGACAATCTCTGCAGTTTCGGAATTTGAATTCAGAGAAACAAAATATACAATTGGAGGTCATTAGAGGTGGGAGAACAATTAAATTGTCGATATTTGATATTGTTGTTGGTGATGTCATACCCCTGAAAATAGGAGATCAGGTTCCTGCTGATGGAGTATTAATCACCAGTCATTCACTTGCAATTGATGAATCTAGTATGACTGGTGAAAGCAAGATTGTTCATAAGGATCACAAAGCACCCTTTTTGATGTCTGGTTGCAAAGTAGCCGATGGAGTTGGTGTTATGCTGGTAACTGCGGTTGGGATTAATACTGAATGGGGATTGTTGATGGCAAGTATCTCAGAGGATACTGGAGAAGAAACTCCGTTACAGGTACGTTTGAATGGAGTAGCAACTTTTATTGGTATAGTTGGGCTTACTGTAGCAGTTTTGGTACTTGCTGTCCTCTTGGGCAGATACTTTTCCGGCCATACGAAAGATTTAAATGGAAATGCTGAATTTGTTGCGAGAAGGACTAGTATTAGTGATGCAATAGATGGGGTCATCAAAATTTTTACCATTGCAGTCACAATTGTGGTTGTTGCAGTGCCTGAAGGTCTACCTTTGGCTGTTACCTTAACCCTGGCATTCTCAATGCGGAAAATGATGGCAGACAAAGCCTTGGTACGAAGGCTGTCAGCCTGCGAAACCATGGGCTCTGCTACAACAATTTGCAGTGATAAGACAGGAACACTGACCTTAAATCAGATGACTGTCGTTGAGGCATATGTCGGGAAGAAGAAAGTAATTCCACCGGATGATTCATCAAAGCTGCATCCAGAAGTATTATCCCTGATAAATGAGGGCATTGCGCAGAATACAACGGGAAATGTTTTTGTGCCTAAGGATGGTGGAGAGACAGAGGTGTCAGGATCTCCTACAGAGAAGGCAATTCTTTCATGGGCAGTCAAGTTGGGTATGAATTTTGATCTTATTAGATCAAATTCGACAGTTCTTCATGTCTTCCCATTCAATTCTGAGAAAAAGCGAGGTGGTGTTGCTCTGAAGATGGCGGACTCTGGAGTACATATACACTGGAAAGGAGCTGCAGAGATAGTTCTGGGAACATGTACTCAATATCTTGATTCAAATGGTCATTTGCAATCCATTGAAGAAGAGAAGGTATTTTTTAAGGAGGCTATTGATGACATGGCAGCTCGCAGCTTGCGTTGTGTTGCCATTGCTTACAGATCATATGAATTAGACAAAGTTCCATCCAATGAGGAGGATTTAGATCAGTGGTCCTTGCCAGAACATGAGCTTGTGTTGCTTGCTATTGTTGGAATAAAGGATCCTTGTCGCCCTGGTGTCAAAGATGCTGTGAAAGTATGCACTGATGCCGGTGTTAAGGTACGCATGGTTACTGGGGACAACCTTCAAACAGCAAAGGCAATAGCTTTGGAGTGTGGGATACTGGCTTCAAATGAAGATGCTGTTGAGCCAAATATAATTGAAGGAAAGAACTTCCGTGAGCTATCTGAAAAAGAAAGGGAACAGGTTGCCAAGAAAATAACGGTGATGGGGAGGTCTTCTCCTAATGACAAGCTTTTGCTTGTGCAAGCATTACGTAAACTAGGTGAAGTCGTTGCTGTCACAGGAGATGGCACCAATGATGCACCTGCCCTTCATGAGGCAGATATTGGTCTATCTATGGGCATCCAAGGAACTGAAGTTGCAAAAGAAAGCTCAGATATTATAATCCTGGATGATAACTTTGCATCAGTAGTAAAGGTTGTGCGCTGGGGCCGCTCTGTATATGCAAATATTCAGAAATTTATCCAGTTCCAGCTTACTGTTAATGTGGCTGCTCTTGTAATAAATGTTGTGGCAGCAATAACTTCTGGTGATGTTCCGTTAAATGCAGTGCAGCTTTTGTGGGTCAACCTTATCATGGACACACTTGGGGCCCTTGCACTGGCTACTGAACCACCAACAGACCACCTAATGCACAGATCACCAGTTGGCCGAAGGGAATCTCTTATAACGAATATCATGTGGAGAAACTTGATCGTACAGGCTGTCTATCAAATCATTGTTCTTCTCGTTCTTAACTTCTGCGGTGAAAGTCTTCTACCTAACCAAGATACCAAAGCTCGTGCCTTTCAAGTGAAGAATACTGTAATATTCAATGCATTTGTCCTGTGCCAAATATTCAACGAGTTCAATGCTCGGAAACCAGATGAAATAAATGTCTTCCGAGGAATGACTAAGAACCGTCTCTTCATGGGAATTGTAGGAATCACCTTTATACTTCAGATAATCATCATCGAGTTCCTAGGAAAGTTCACTTCAACAGTGAAGCTTGATTGGAAGCTGTGGCTTGCTTCTCTTTGTATTGGCTTTGTCAGCTGGCCTCTTGCTATAGCTGGAAAATTCATTCCAGTTCCCAAAACACCATTGTCCCGTTACTTCTTGAAGCCCTTGAGGCGATTGAGGAGGTCTCGAGCTGCACAGTAG 3267 0.4328 MTPGSNGHHTVTIATSHPDSDGLPPSDDNNHHQDDDDELDPDDPFAITQTKNASHETLRRWRQAALVLNASRRFRYTLDLRKEEEKQEKKSLIRAHAQVIRAALLFRLAGERELVISAAATPQTPVGGDYAVGLEQLASMSKDQNVSTLRQYGGIKGLSNLLKSNPDKGISGDDADVSKRKNAFGTNTYPRKKGRSFWRFLWEAWQDLTLIILIIAAAVSLVLGIKTEGLDEGWYDGGSIAFAVVLVIVVTAVSDYRQSLQFRNLNSEKQNIQLEVIRGGRTIKLSIFDIVVGDVIPLKIGDQVPADGVLITSHSLAIDESSMTGESKIVHKDHKAPFLMSGCKVADGVGVMLVTAVGINTEWGLLMASISEDTGEETPLQVRLNGVATFIGIVGLTVAVLVLAVLLGRYFSGHTKDLNGNAEFVARRTSISDAIDGVIKIFTIAVTIVVVAVPEGLPLAVTLTLAFSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTLNQMTVVEAYVGKKKVIPPDDSSKLHPEVLSLINEGIAQNTTGNVFVPKDGGETEVSGSPTEKAILSWAVKLGMNFDLIRSNSTVLHVFPFNSEKKRGGVALKMADSGVHIHWKGAAEIVLGTCTQYLDSNGHLQSIEEEKVFFKEAIDDMAARSLRCVAIAYRSYELDKVPSNEEDLDQWSLPEHELVLLAIVGIKDPCRPGVKDAVKVCTDAGVKVRMVTGDNLQTAKAIALECGILASNEDAVEPNIIEGKNFRELSEKEREQVAKKITVMGRSSPNDKLLLVQALRKLGEVVAVTGDGTNDAPALHEADIGLSMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINVVAAITSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMHRSPVGRRESLITNIMWRNLIVQAVYQIIVLLVLNFCGESLLPNQDTKARAFQVKNTVIFNAFVLCQIFNEFNARKPDEINVFRGMTKNRLFMGIVGITFILQIIIIEFLGKFTSTVKLDWKLWLASLCIGFVSWPLAIAGKFIPVPKTPLSRYFLKPLRRLRRSRAAQ* 1089
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g02371 1088 CDD P-type_ATPase_Ca_PMCA-like 177 935 - -
Rops4g02371 1088 Gene3D - 203 1053 - -
Rops4g02371 1088 MobiDBLite consensus disorder prediction 1 54 - -
Rops4g02371 1088 PRINTS Sodium/potassium-transporting ATPase signature 614 632 - -
Rops4g02371 1088 PRINTS Sodium/potassium-transporting ATPase signature 238 258 - -
Rops4g02371 1088 PRINTS Sodium/potassium-transporting ATPase signature 488 509 - -
Rops4g02371 1088 Gene3D - 53 107 - -
Rops4g02371 1088 Pfam haloacid dehalogenase-like hydrolase 492 816 - -
Rops4g02371 1088 FunFam Calcium-transporting ATPase 203 260 - -
Rops4g02371 1088 SFLD p-type atpase 477 854 IPR044492 -
Rops4g02371 1088 FunFam Calcium-transporting ATPase 251 371 - -
Rops4g02371 1088 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 502 699 IPR023299 GO:0000166
Rops4g02371 1088 FunFam Calcium-transporting ATPase 819 1067 - -
Rops4g02371 1088 SUPERFAMILY Calcium ATPase, transduction domain A 273 368 IPR008250 -
Rops4g02371 1088 NCBIfam HAD-IC family P-type ATPase 435 522 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Rops4g02371 1088 NCBIfam HAD-IC family P-type ATPase 768 883 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Rops4g02371 1088 Pfam E1-E2 ATPase 272 473 - -
Rops4g02371 1088 SUPERFAMILY Calcium ATPase, transmembrane domain M 152 1065 IPR023298 -
Rops4g02371 1088 ProSitePatterns E1-E2 ATPases phosphorylation site. 497 503 IPR018303 -
Rops4g02371 1088 PANTHER CATION TRANSPORTING ATPASE 109 1065 - -
Rops4g02371 1088 MobiDBLite consensus disorder prediction 1 23 - -
Rops4g02371 1088 FunFam Calcium-transporting ATPase 695 847 - -
Rops4g02371 1088 Gene3D - 174 371 - -
Rops4g02371 1088 FunFam Calcium-transporting ATPase 53 109 - -
Rops4g02371 1088 Pfam Ca2+-ATPase N terminal autoinhibitory domain 42 85 IPR024750 GO:0005516
Rops4g02371 1088 FunFam Calcium-transporting ATPase 505 702 - -
Rops4g02371 1088 Gene3D - 492 847 IPR023214 -
Rops4g02371 1088 Coils Coil 637 657 - -
Rops4g02371 1088 Pfam Cation transporting ATPase, C-terminus 887 1062 IPR006068 -
Rops4g02371 1088 Pfam Cation transporter/ATPase, N-terminus 153 220 IPR004014 -
Rops4g02371 1088 SMART Cation_ATPase_N_a_2 151 225 IPR004014 -
Rops4g02371 1088 Gene3D - 505 702 IPR023299 GO:0000166
Rops4g02371 1088 FunFam Calcium-transporting ATPase 9 plasma membrane-type 349 519 - -
Rops4g02371 1088 SUPERFAMILY HAD-like 493 907 IPR036412 -
Rops4g02371 1088 NCBIfam calcium-translocating P-type ATPase, PMCA-type 141 1065 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Rops4g02371 1088 PRINTS P-type cation-transporting ATPase superfamily signature 495 509 - -
Rops4g02371 1088 PRINTS P-type cation-transporting ATPase superfamily signature 695 706 - -
Rops4g02371 1088 PRINTS P-type cation-transporting ATPase superfamily signature 717 727 - -
Rops4g02371 1088 PRINTS P-type cation-transporting ATPase superfamily signature 802 821 - -
Rops4g02371 1088 PRINTS P-type cation-transporting ATPase superfamily signature 319 333 - -
Rops4g02371 1088 PRINTS P-type cation-transporting ATPase superfamily signature 826 838 - -
Rops4g02371 1088 SFLD C1.7: P-type atpase like 477 854 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g02371 Rops-Chr4 50824127 50849030 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g02371 2 1087 Primary Pumps ATPases AT3G21180 75.735 0.0 1653
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g02371 K01537 - gmx:100777845 1835.46