Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g02369 ATGCATACTGATTTGCAGTTTCAGAGACTTTGGCTCGAGATGGGTGAAGAGGTGAAGGCAATAGTTCCAGAGTCAGTGCTGAAGAAGCAGAAGAGGGAAGAGGAATGGGCGTTGGCCAAAAAGCAGGAGCTTGAAGCTGCCAAGAAGAAGAGGGCTGAGAGCCGTAAGTTGCTCTTCAGCAGGGCTAAGCAGTATGCCAAGGAGTACGAGGCGCAGGAAAAGGAATTGATTCAATTGAAACGTGAGGCTAAGCTGAAAGGTGGATTTTATGTTGATCCAGAGGCTAAGCTCTTGTTTATTATTCGCATTCGTGGTATTAATGCCATGCATCCCAAGACAAGAAAGATCTTGCAGCTATTGCGTTTGAGACAGATTTTCAATGGTGTATTCCTTAAAGTTAACAAGGCAACAGTGAACATGCTGCACAGAGTTGAGCCTTATGTGACTTTTGGATACCCTAATCTGAAGAGTGTTAGGGAACTTATTTACAAGAGGGGGTATGGAAAGCTAAACAAGCAGAGAATTGCCCTAACTGACAACTCCATTATTGAGCAGGGTCTGGGCAAGCATGGAATCATATCCACTGAAGATCTTATCCACGAGATCATCACTGTTGGACCTCATTTCAAGGAGGCAAACAACTTCCTTTGGCCATTTAAGCTCAAGGCTCCTTTGGGTGGTTTGAAGAAGAAGAGGAACCACTATGTTGAAGGAGGTGATGCTGGAAACCGGGAGAATTACATCAATGAGCTAATCAGGAGAATGAACTAA 771 0.4436 MHTDLQFQRLWLEMGEEVKAIVPESVLKKQKREEEWALAKKQELEAAKKKRAESRKLLFSRAKQYAKEYEAQEKELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAMHPKTRKILQLLRLRQIFNGVFLKVNKATVNMLHRVEPYVTFGYPNLKSVRELIYKRGYGKLNKQRIALTDNSIIEQGLGKHGIISTEDLIHEIITVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNRENYINELIRRMN* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g02369 256 Gene3D - 200 256 IPR036919 -
Rops4g02369 256 Gene3D - 97 199 IPR036919 -
Rops4g02369 256 Coils Coil 27 47 - -
Rops4g02369 256 CDD Ribosomal_L7_archeal_euk 97 256 IPR035808 -
Rops4g02369 256 NCBIfam 60S ribosomal protein uL30 23 256 IPR005998 GO:0000463|GO:0003735|GO:0022625
Rops4g02369 256 ProSitePatterns Ribosomal protein L30 signature. 116 148 IPR018038 -
Rops4g02369 256 PANTHER 60S RIBOSOMAL PROTEIN L7 20 256 IPR039699 -
Rops4g02369 256 FunFam 60S ribosomal protein L7 97 201 - -
Rops4g02369 256 FunFam 60S ribosomal protein L7 202 256 - -
Rops4g02369 256 Pfam Ribosomal protein L30p/L7e 98 148 IPR016082 -
Rops4g02369 256 Coils Coil 62 86 - -
Rops4g02369 256 SUPERFAMILY Ribosomal protein L30p/L7e 97 256 IPR036919 -
Rops4g02369 256 Pfam Ribosomal L30 N-terminal domain 22 93 IPR012988 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g02369 Rops-Chr4 50802757 50805016 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g02369 17 256 Cytoplasmic Ribosomal Protein Gene Family AT3G13580 86.250 2.11e-156 432
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g02369 K02937 - gmx:100813342 410.223