Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g02366 ATGAAGAAGCCTTTCAAGTTCTCTATTTGTCATTGCTCTTCCTGTCACCCCAATCCCCAAGGTCCCGTGCTTCTGGGCTGTTTTGCAGATCAAGTCACAACCTTCAATTGTCTTGCCCGTATTTTTGGCCCTTCTTGTACCATGGATGGTATTCATGGGGGTGATTCTGGAATACACATCAGTGATGGACAGCATCCTATACATGTTCCATATGTGCAAGAGCATGTGCGTCATGCGTTGCACCATATGAGCAATGGGAATGGGATCAATGATGATCAGAATAACGGTGGTGGAAGTGAGAGTGTGGAAGGTGAAGTCCCCTCCAATCATGGAAATCTCCCTGACAATCACGCTGTAATAATGGATCAAGGGAATGATGGAGGGGATCAGCTTACATTGTCTTTTCAGGGCCAGGTTTATGTCTTTGATTCCGTGTCGCCAGAAAAGGTTCAAGCTGTACTGCTATTACTGGGAGGCCGTGAAATACCTCCAACTATGCCTGCCATCCCAATATCTTCTCACCAGGATAACCAGGGATTTACTGGTACTCCACAAAAATTCAACGTCCCTCAGAGATTAGCTTCATTGATTAGATTTCGTGAAAAACGGAAGGAACGAAATTTTGACAAAAAAATTCGTTATACTGTTCGTAAAGAAGTAGCATTAAGGATGCAAAGAAATAAAGGTCAGTTTACATCTTCCAAGTCCAATCATGATGAATCTGCATCAGCTGCGACAAATTGGGGAACAAATGAAAACTGGACGTCAGACAATAATGGATCCCAACAGCAAGATATTGTTTGTAGGCACTGTGGCACCAGTGAGAAGTGCACACCAATGATGCGACGTGGGCCTGAAGGGCCAAGAACCCTCTGCAATGCTTGTGGACTTATGTGGGCAAATAAGGGAACTCTGAGGGACCTATCAAGGGCAGCACCCTTGCCTGGACATAATTCTTCATTAATCAAGAATGAGAATAAAAATTTAGAGGCCACCAACCAGATAGCAGAGAGAGTGTCAGGAGATACTGATGAGCCATTATGA 1044 0.4425 MKKPFKFSICHCSSCHPNPQGPVLLGCFADQVTTFNCLARIFGPSCTMDGIHGGDSGIHISDGQHPIHVPYVQEHVRHALHHMSNGNGINDDQNNGGGSESVEGEVPSNHGNLPDNHAVIMDQGNDGGDQLTLSFQGQVYVFDSVSPEKVQAVLLLLGGREIPPTMPAIPISSHQDNQGFTGTPQKFNVPQRLASLIRFREKRKERNFDKKIRYTVRKEVALRMQRNKGQFTSSKSNHDESASAATNWGTNENWTSDNNGSQQQDIVCRHCGTSEKCTPMMRRGPEGPRTLCNACGLMWANKGTLRDLSRAAPLPGHNSSLIKNENKNLEATNQIAERVSGDTDEPL* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g02366 347 Pfam tify domain 129 158 IPR010399 -
Rops4g02366 347 MobiDBLite consensus disorder prediction 83 115 - -
Rops4g02366 347 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 263 326 - -
Rops4g02366 347 SMART GATA_3 262 315 IPR000679 GO:0006355|GO:0043565
Rops4g02366 347 CDD ZnF_GATA 267 309 IPR000679 GO:0006355|GO:0043565
Rops4g02366 347 ProSitePatterns GATA-type zinc finger domain. 268 295 IPR000679 GO:0006355|GO:0043565
Rops4g02366 347 ProSiteProfiles Tify domain profile. 124 159 IPR010399 -
Rops4g02366 347 PANTHER GATA TRANSCRIPTION FACTOR 28 77 328 IPR045280 GO:0006355
Rops4g02366 347 Pfam CCT motif 192 234 IPR010402 GO:0005515
Rops4g02366 347 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 27 - -
Rops4g02366 347 MobiDBLite consensus disorder prediction 327 347 - -
Rops4g02366 347 MobiDBLite consensus disorder prediction 230 262 - -
Rops4g02366 347 Pfam GATA zinc finger 268 304 IPR000679 GO:0006355|GO:0043565
Rops4g02366 347 ProSiteProfiles CCT domain profile. 192 234 IPR010402 GO:0005515
Rops4g02366 347 ProSiteProfiles GATA-type zinc finger domain profile. 262 310 IPR000679 GO:0006355|GO:0043565
Rops4g02366 347 Gene3D - 258 328 IPR013088 GO:0006355|GO:0008270
Rops4g02366 347 MobiDBLite consensus disorder prediction 86 106 - -
Rops4g02366 347 SMART tify_2 124 159 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g02366 Rops-Chr4 50772878 50778570 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g02366 48 342 Tify Gene Family AT1G51600 62.791 5.18e-133 379
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Rops4g02366 CCT 1.1e-14 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g02366 - - gmx:100812262 493.426