Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g02355 ATGGCGAAGAAATCGCAGAAAAGCCTCAAGAACAACACTACTGCCAAGAGTAACACACCAACGACAGTGAAACGAACACGCAAAAGCATCCCAAGAGACTCTCCTCCACAACGAAGCTCAATCTACAGGGGTGTCACAAGGCATCGATGGACTGGTCGGTATGAAGCTCATTTGTGGGATAAGAATTGCTGGAATGAATCACAAAGCAAGAAAGGAAGACAAGTGTATCTAGGGGCCTATGATGATGAAGAAGCTGCAGCACGTGCCTATGACTTGGCAGCATTGAAGTACTGGGGCCAAGACACCATTCTCAATTTTCCATTATCAAATTATCAAGAGGAGCTCAAGGAGATGGAGGGCCAATCTAAAGAAGAATATATTGGATCCTTAAGAAGGAAAAGCAGTGGATTCTCACGAGGAGTCTCAAAATACAGAGGAGTAGCAAGACACCACCACAATGGAAGATGGGAAGCTCGAATTGGGAGGGTATTCGGCAACAAATATCTATACCTTGGAACTTATGCTACACAAGAAGAAGCAGCCACAGCATATGACATGGCAGCCATAGAATACCGAGGACTTAACGCTGTTACAAACTTTGACCTCAGCCGTTACGTCAATTGGTTACGTCCTAAAACTCAACAAGATAACCATGAAAACCTTAAAAACCAAGAACTAAACCTTAATCCTGAACTTGAGGAAGGTTTTGTTTCCCATCAACCTGGGTCATCCACACAAGTGGGTTCTGCACGTTCTGGTGGTGAGGCTTCAACATCTTCTGCACTTGGGCTTCTCTTACAATCATCAAAATTCAAAGAGATGCTTGAAAAGACTTCATCAGCTTCAGAATACCCTCCAGCACCTGCAGAGTCAACCCCTCCTCGTCACACATTCCCTGAAGATATTCAAACAATCTTTGAAAGTCAAGATTCAGGTATCTACACTGAAAATGATGACATTATATTTGGTGACTTTAGCTCATTTGCTGCACCCATTTTTCATTATGAGCTTGACGCTTAG 1020 0.4333 MAKKSQKSLKNNTTAKSNTPTTVKRTRKSIPRDSPPQRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQSKKGRQVYLGAYDDEEAAARAYDLAALKYWGQDTILNFPLSNYQEELKEMEGQSKEEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDMAAIEYRGLNAVTNFDLSRYVNWLRPKTQQDNHENLKNQELNLNPELEEGFVSHQPGSSTQVGSARSGGEASTSSALGLLLQSSKFKEMLEKTSSASEYPPAPAESTPPRHTFPEDIQTIFESQDSGIYTENDDIIFGDFSSFAAPIFHYELDA* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g02355 339 ProSiteProfiles AP2/ERF domain profile. 143 201 IPR001471 GO:0003700|GO:0006355
Rops4g02355 339 Gene3D AP2/ERF domain 142 203 IPR036955 GO:0003700|GO:0006355
Rops4g02355 339 Gene3D AP2/ERF domain 41 109 IPR036955 GO:0003700|GO:0006355
Rops4g02355 339 MobiDBLite consensus disorder prediction 1 44 - -
Rops4g02355 339 CDD AP2 142 203 IPR001471 GO:0003700|GO:0006355
Rops4g02355 339 ProSiteProfiles AP2/ERF domain profile. 41 107 IPR001471 GO:0003700|GO:0006355
Rops4g02355 339 SUPERFAMILY DNA-binding domain 142 203 IPR016177 GO:0003677
Rops4g02355 339 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 14 259 - -
Rops4g02355 339 Pfam AP2 domain 142 193 IPR001471 GO:0003700|GO:0006355
Rops4g02355 339 Pfam AP2 domain 41 99 IPR001471 GO:0003700|GO:0006355
Rops4g02355 339 SMART rav1_2 41 113 IPR001471 GO:0003700|GO:0006355
Rops4g02355 339 SMART rav1_2 143 207 IPR001471 GO:0003700|GO:0006355
Rops4g02355 339 FunFam AP2-like ethylene-responsive transcription factor 40 109 - -
Rops4g02355 339 FunFam AP2-like ethylene-responsive transcription factor 142 203 - -
Rops4g02355 339 PRINTS Ethylene responsive element binding protein signature 183 203 IPR001471 GO:0003700|GO:0006355
Rops4g02355 339 PRINTS Ethylene responsive element binding protein signature 42 53 IPR001471 GO:0003700|GO:0006355
Rops4g02355 339 MobiDBLite consensus disorder prediction 238 256 - -
Rops4g02355 339 MobiDBLite consensus disorder prediction 235 256 - -
Rops4g02355 339 MobiDBLite consensus disorder prediction 1 25 - -
Rops4g02355 339 MobiDBLite consensus disorder prediction 276 298 - -
Rops4g02355 339 SUPERFAMILY DNA-binding domain 40 109 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g02355 Rops-Chr4 50703476 50707612 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g02355 37 205 AP2-EREBP Transcription Factor Family AT5G57390 74.556 3.86e-92 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Rops4g02355 AP2 4.7e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g02355 K09285 - pop:18097139 490.345