Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g02353 ATGGACAAGTACGAGAAGTTAGAGAAGGTTGGTGAAGGAACATACGGAAAGGTGTACAAGGCAATGGAGAAATCAAGTGGGCAAGTTGTAGCACTGAAGAAGACCCGTCTCGAGATGGACGAGGAAGGTGTCCCTCCCACTGCCCTCAGAGAAATCTCAATCCTTCAATTGCTCTCTCAGTCCATCTATGTCGTACGCCTTATCGATGTTGAACACGTCGACAAGGGGGACCCACCAAAACCCATCCTCTACCTTGTCTTCGAATACCTCGACACCGATCTCAAGAAATTCATCGATTCCCACCGTAAGGGTTCAAACCCTAGACCTCTTCCACCTTCACTGATCCAGAGTTTTTTGTTTCAGTTATGTAAGGGTGTTGCACACTGCCACAGCCATGGTGTGCTCCACCGTGATCTGAAGCCCCAGAACCTTCTTCTCGACCAGAAAAAGGGTATTCTCAAAGTCGGCGACCTCGGACTCGGTCGTGCCTTCACTGTCCCTCTTAAAAGCTACACTCACGAGATTGTTACCCTTTGGTATAGAGCTCCTGAGGTTCTTCTTGGATCCACCCATTACTCTACTGGGGTTGACATGTGGTCTGTTGGATGCATCTTTGCGGAAATGGTGAGGAGGCAAGCTTTGTTTCCTGGGGATTCTGAGTTCCAGCAGTTGCTTAACATTTTCAAGCTTTTGGGGACTCCAACGGAGGAGCAATGGCCTGGAGTTACTTCTTTGCGTGATTGGCATGTCTACCCACGTTGGGAGCCTCAGAACTTGGCAAGGGCTGTCCCTTCCTTAGGACCTGATGGGGTGGATCTCCTTTCGAAAATGCTCAAGTATAATCCTGTTGAGAGAATATCTGCCAAAGCAGCACTTGATCATCCCTACTTTGACAGTCTTGACAAGTCTCAATATTAA 918 0.4837 MDKYEKLEKVGEGTYGKVYKAMEKSSGQVVALKKTRLEMDEEGVPPTALREISILQLLSQSIYVVRLIDVEHVDKGDPPKPILYLVFEYLDTDLKKFIDSHRKGSNPRPLPPSLIQSFLFQLCKGVAHCHSHGVLHRDLKPQNLLLDQKKGILKVGDLGLGRAFTVPLKSYTHEIVTLWYRAPEVLLGSTHYSTGVDMWSVGCIFAEMVRRQALFPGDSEFQQLLNIFKLLGTPTEEQWPGVTSLRDWHVYPRWEPQNLARAVPSLGPDGVDLLSKMLKYNPVERISAKAALDHPYFDSLDKSQY* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g02353 305 ProSitePatterns Serine/Threonine protein kinases active-site signature. 134 146 IPR008271 GO:0004672|GO:0006468
Rops4g02353 305 Pfam Protein kinase domain 4 297 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops4g02353 305 PANTHER CELL DIVISION PROTEIN KINASE 1 297 - -
Rops4g02353 305 SMART serkin_6 4 297 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops4g02353 305 ProSiteProfiles Protein kinase domain profile. 4 297 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops4g02353 305 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Rops4g02353 305 SUPERFAMILY Protein kinase-like (PK-like) 1 300 IPR011009 -
Rops4g02353 305 Gene3D Phosphorylase Kinase; domain 1 1 91 - -
Rops4g02353 305 FunFam Cyclin-dependent kinase 2 93 304 - -
Rops4g02353 305 Gene3D Transferase(Phosphotransferase) domain 1 93 305 - -
Rops4g02353 305 FunFam Cyclin-dependent kinase B2,2 1 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g02353 Rops-Chr4 50676115 50677932 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g02353 1 305 Core Cell Cycle Gene Families AT3G54180 83.172 0.0 534
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-Pl Rops4g02353 Pkinase 2.4e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g02353 K07760 - gmx:100805119 567.385