Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g02349 ATGAGTATTTTTAACCAATACAACTTAGTTTTCTTAGAAACATTGTTCTTCTTTCTATTTGTATTCCCAATTTCAACATTTGGTCGCTACAGCCACCCTTCTCATTCTTTGCAAACAGATAAGGCTGCTCTTCTGGAATTCAAGAAAACAATCATATCTGATCCTAATTCCTCACTAGCTAACTGGGGTGAAGCTAATCATGTTTGCAACTTCACAGGTGTTGAATGTGATGAATCCCAACACCGTGTTATAAGACTAATCTTGCATGATAATTATCTCGTGGGGCTTTTTTCACCTGTCCTTTCCAATCTCACTGGACTGCACATCCTTGATATTGTTCAAAATCACTTGTTTGGCATTATTCCACCCGAGTTATCCTCCCTCAAACGTCTCCACCATATTCGTCTTGAGGGGAACAACTTGCATGGTTCAATACCCGAGTCCTTTTCCCAACTTTCCAAGCTTAGACTTCTACATATCAAAGAAAGTAACATAGCAGGTTCACTTCCTCCTTCTCTCTTTTCCAATTGCACTCTAATAGACAATGTGGACCTTTCAGGCAACTCTCTAAGTGGTAAAATCCCAGAAGAGATTGGAAACTGCCAAGCCTTGTGGACTCTCACTCTATACAACAATCAGTTCACTGGACAGCTTCCACTCTCTTTGGCTAATCTATCATCAATTGAAAATATAGACGTGGAGTCCAATTATCTTTCAGGTGAATTGCCAACAAAGTTAGTAAGTAGCTGGCCCTATCTTCATTACCTTCAGCTATCATACAACACTATGATAAGTCATGATAACAATACCAATCTTGATCCCTTTTTCACTGCTCTTAGAAACAGCACTGATCTAGAGGAGCTTGAATTGGCAGGCATGGGCCTTGGGGGAAGGTTCTCCAATACTGTGATTAGCCAACTTGCCCCCAGTCTAAGAACTCTGCTACTTCAGGAAAACCAAATATTTGGATCAATTCCTCATTCAATAGCAAATCTTTCTAGGCTTTCCATTCTCAATTTAACATCCAATCTTCTAAATGGAACTATTTCACCTGAGATTTGCAGTATACCAAACTTGGAACAGCTTTTCTTATCAAACAACCTGTTCAACACTTCAATTCCAGAAGCACTTGGCCATTGTCCACATCTGGGTTTACTAGATCTGTCACACAATGAATTTTCAGGTAGGATTCCAGAAAGTTTGGGAAATTTGGTTAGACTAAGTTATTTGTTTCTCAACAATAACCTTCTCTCAGGAACAATACCTTCTACATTTGCACAGTGCACTAATATTTACAAGCTTGACCTGTCCCATAATAGATTAACAGGAAACATCCCGCAGGATCTTTCAGGCCTTCATGAAATCAGAATTTTCATAAATCTTTCACATAATCACCTTGAAGGTCCACTGCCAATTGAGCTCAGCAAACTAGAAAAGGTTCAAGAGATAGACCTTTCATCAAATCACCTCACTGGAAGTATCTTCCCTCAGATAGCTAGCTGCATTGCTGTTTCAATGATAAATTTTTCAAACAATCTCCTTGAAGGTGAACTACCACAATCCTTAGGTGATCTGAAGAACCTCCAATCCTTTGATGTTTCAAGAAATCAATTATCTGGATTGATACCAGCAACACTTGGTAAAATTGACACACTAACTTTCCTCAATTTATCATTTAACAACCTGGAAGGAATGATTCCGTCTGGGGGCATCTTTAATTCAGTGTCAATTTTTTCATTCTTAGGAAACCCATGTGTGTGTGGGGACATTGCAGGCATATCCTTGTGCTCTCAAAAGAGACAATGGTTTCACTCTCGCCTGTTCTTGATTGTATTGGTTTTAATAATCTTCATATCAACTTTCTTGTCCACAATTTGTTGTGTGATTGGATGCAAGCGCCTTAAAGGAATCATCTCCTCTCACAAGACTGAGGCAGGTAAAAAACAAGTTAGACCCGAGTTGATATCGAACTTCCCAAGAATCACATACAAGGAACTATCAGATGCCACAGGAGGATTTGACATTCAGAGACTAGTTGGATCAGGTAGATTTGGACATGTCTATAGAGGAATTTTTCTAGATGGGACGCTAATAGCAGTTAAGGTGCTGCATTTGCAATCTGAAAGTTCCACCAAGAGCTTTAACCGAGAATGCCAAGTTTTAAAGAGAATTAGGCACAGGAATCTTATAAGGATTATCACAACATGCAGTCTACCTGATTTTAAGGCTCTTGTTCTACCTTATATGGCCAATGGGAGCTTGGAGAGTCGCCTTTATCCTTCTTCTGGATCACAAGACTTGAGTATTATCCAGAGGGTGAATATTTGCAGTGACATAGCTGAAGGGATGGCCTATTTGCATCATCATTCCCCGATCAGAGTTGTACACCGTGATCTAAAACCAAGCAATGTTCTTCTCAATGATGACATGACAGCTCTAGTTTCTGATTTCGGGATTGCAAGGTTAATTACGAGTGTTGGAGAAGGAAATGGTGGGGTTGTTACTAACATGGGGAACTCCACTGCAAATTTGTTGTGCGGATCCATTGGATACATAGCACCAGAATATGGATATGGATCAAATACATCTACGAAAGGAGATGTCTACAGCTTTGGCATTCTAGTTCTTGAGATGGTGACTAGGAAAAGACCAACAGATGACATGTTTGTTGGTGGATTAAGTCTACACAAATGGGTAAAGAGTCATCATTATCATGGAAGCTTAGAAAAAGTGTTAGACCCTACTGTGGTGATGGTTACAAGAGATCAATCTCAGGAGGTAAAGAAGATGTGGGAAATTGCAATAGGAGAGTTAATTGAGCTGGGGATCCTGTGCACACAGGATTCACCTTCTACAAGGCCTACCATGCTTGATGCAGCAGATGATTTGGATCGTCTCAAGAGATACCTTACTGAGGACACAACTGGAACTTTTGCCTCATCTCTTGGAATTTCATCTTCCATTTTTGGTGATTATTAA 2979 0.3981 MSIFNQYNLVFLETLFFFLFVFPISTFGRYSHPSHSLQTDKAALLEFKKTIISDPNSSLANWGEANHVCNFTGVECDESQHRVIRLILHDNYLVGLFSPVLSNLTGLHILDIVQNHLFGIIPPELSSLKRLHHIRLEGNNLHGSIPESFSQLSKLRLLHIKESNIAGSLPPSLFSNCTLIDNVDLSGNSLSGKIPEEIGNCQALWTLTLYNNQFTGQLPLSLANLSSIENIDVESNYLSGELPTKLVSSWPYLHYLQLSYNTMISHDNNTNLDPFFTALRNSTDLEELELAGMGLGGRFSNTVISQLAPSLRTLLLQENQIFGSIPHSIANLSRLSILNLTSNLLNGTISPEICSIPNLEQLFLSNNLFNTSIPEALGHCPHLGLLDLSHNEFSGRIPESLGNLVRLSYLFLNNNLLSGTIPSTFAQCTNIYKLDLSHNRLTGNIPQDLSGLHEIRIFINLSHNHLEGPLPIELSKLEKVQEIDLSSNHLTGSIFPQIASCIAVSMINFSNNLLEGELPQSLGDLKNLQSFDVSRNQLSGLIPATLGKIDTLTFLNLSFNNLEGMIPSGGIFNSVSIFSFLGNPCVCGDIAGISLCSQKRQWFHSRLFLIVLVLIIFISTFLSTICCVIGCKRLKGIISSHKTEAGKKQVRPELISNFPRITYKELSDATGGFDIQRLVGSGRFGHVYRGIFLDGTLIAVKVLHLQSESSTKSFNRECQVLKRIRHRNLIRIITTCSLPDFKALVLPYMANGSLESRLYPSSGSQDLSIIQRVNICSDIAEGMAYLHHHSPIRVVHRDLKPSNVLLNDDMTALVSDFGIARLITSVGEGNGGVVTNMGNSTANLLCGSIGYIAPEYGYGSNTSTKGDVYSFGILVLEMVTRKRPTDDMFVGGLSLHKWVKSHHYHGSLEKVLDPTVVMVTRDQSQEVKKMWEIAIGELIELGILCTQDSPSTRPTMLDAADDLDRLKRYLTEDTTGTFASSLGISSSIFGDY* 993
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g02349 992 Gene3D Ribonuclease Inhibitor 267 603 IPR032675 -
Rops4g02349 992 FunFam LRR receptor-like serine/threonine-protein kinase EFR 302 602 - -
Rops4g02349 992 ProSiteProfiles Protein kinase domain profile. 673 970 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops4g02349 992 Gene3D Ribonuclease Inhibitor 37 196 IPR032675 -
Rops4g02349 992 Gene3D Phosphorylase Kinase; domain 1 643 748 - -
Rops4g02349 992 ProSitePatterns Protein kinases ATP-binding region signature. 679 701 IPR017441 GO:0005524
Rops4g02349 992 SMART serkin_6 673 970 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops4g02349 992 SUPERFAMILY L domain-like 305 588 - -
Rops4g02349 992 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 749 975 - -
Rops4g02349 992 CDD STKc_IRAK 679 966 - -
Rops4g02349 992 SMART LRR_typ_2 152 176 IPR003591 -
Rops4g02349 992 SMART LRR_typ_2 525 548 IPR003591 -
Rops4g02349 992 SMART LRR_typ_2 404 427 IPR003591 -
Rops4g02349 992 SMART LRR_typ_2 128 151 IPR003591 -
Rops4g02349 992 SMART LRR_typ_2 356 380 IPR003591 -
Rops4g02349 992 Gene3D Transferase(Phosphotransferase) domain 1 749 979 - -
Rops4g02349 992 ProSitePatterns Serine/Threonine protein kinases active-site signature. 794 806 IPR008271 GO:0004672|GO:0006468
Rops4g02349 992 SUPERFAMILY Protein kinase-like (PK-like) 651 963 IPR011009 -
Rops4g02349 992 Pfam Protein kinase domain 675 958 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops4g02349 992 PANTHER OS04G0122200 PROTEIN 347 961 - -
Rops4g02349 992 SUPERFAMILY L domain-like 38 346 - -
Rops4g02349 992 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 78 271 - -
Rops4g02349 992 Gene3D Ribonuclease Inhibitor 199 266 IPR032675 -
Rops4g02349 992 Pfam Leucine rich repeat 406 466 IPR001611 GO:0005515
Rops4g02349 992 Pfam Leucine rich repeat N-terminal domain 38 77 IPR013210 -
Rops4g02349 992 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 654 748 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g02349 Rops-Chr4 50643242 50646544 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g02349 38 953 Receptor kinase-like Gene Family AT3G47570 34.012 8.23e-156 485
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Rops4g02349 Pkinase 1.5e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g02349 - - gmx:100815766 1489.94