Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g02339 ATGCCTTCAAGACCCTTCCCTCCAAGTCCAAGTTTTCTCACCAAAACCAGGGTCCTGTTTCTTGCACTAACCATCTCAGCATGTGTTGTGATCTTCTGTTCAGTCCTTTACTTCCTATACCATCTGTGGCACTTCCTTGTACAAAGAGCTAAAACTATCCCCTTTGAAGCAAGTGCTCCTTTGAAGCTCCAAAGATTCTCATACAAAGAGCTAAAGCATGCTACCAATGACTTTGACACTGCCAATGTCATTGGTAAAGGTGGCTCTGGCACTGTTTTCAGGGGAATACTTAAAGATGGGAAGCTGGTTGCAGTGAAGCGCCTAGACACTTTGTCTTTGCAGACAGAGAGAGAGTTTCAGAATGAGTTGCAGATTCTTGGTGGGTTAAGATCACCTTTTCTGGTGACCCTTTTGGGCTATTGTGTGGAAAAGAACAAGAGAATGTTAGTGTATGAATATATGCCGAACAGAAGTTTGCAGGAGTCCCTCTTTGGAGATGGAAGCTTGTGTTTGAGTTGGGAGAGGAGATTTTGCATAATATTGGATGTTGCCAAAGGGTTGGAATTCTTGCACCTTGGATGTGATCCACCAGTAATCCATGGAGATATTAAGCCAAGCAATGTTCTGCTTGATGCTGAGTACAATGGGAGGATCTCAGACTTTGGTTTGTCAAGGATTAAAGTGGAGGGTGAATATGGCATAGATTTGTTTAGCCAGGACTTGGGGAAGAGCCAGGAGCTTTGGAAAAGCCAAGAGATTTCAGCTAATCTAACTCCAGAAACTCCAGCTATTGGTACTCCAGTTGACAGTGTTAGTGAAGTAGATTTTTCTCTAGCCTTGCAAGCTTCTTCTTCGTCCAAAAATAGTAGGACTTGTTTCAATGTTGGAGCTTTGAACTTGAATTCTTTGAATTATAATGTCAATATTGCCAATGAGAGTGAAATTAGGAATGGCAATGCAAAGGGGAAAGAAGTTTCAACTTCGGATATAGGTGGGGATGATTGGAATAGCAAGTTTGTACCTTATGATGATGAGTTCTCTAGCATTGATCATAGTAAGGAGTTAACTGTTAACTCTTCTTTGGTGGATGATGAGAAGGAAAATGGGAAACAACGGGGAAAAGACTGGTGGTGGAAACAGGATGGAAATGGTGAATTATGCAGCAAGGACTATGTCATGGAGTGGATAGGGAGTCAGATTTCTCCATCAAACGCTGATTGGGATGATGGAAAGAACAATATTCATGGAAAAATAGAGTTGGGAAATTCAAGTCCATTAGATAAACCCAATGACGCAGATGGACATGGACACCAATTACAGGTATTTGAGACAGGAAATACTAATGATGGAGTTGCGAAGAAAGAATCAAGGGGAAAGAAAAATCGTAAGAAGAAGCAAAGGAACATGCAAGAGTGGTGGAAAGAAGAGCACCTTGCTGAATTAAGCAAGAAGAGCAACAAGCTGAAAAATCTTCAAACTAAATGGAAGAAAGGCTTGAAAGTACCCCATTTTGATTTGGGTAGACGATTTTATCTTTGCAGGCGTAATGACTTTGCTAAGGAGGGTCAGAATGAGTGTGATCTTGGAGAGTTTAGTTTCAGGAGAGGTTGGAAGAAGAAAAGTACTCGTTCCATTGGAAGTGATATGTGGAGTGGAGATCTTTTCAGCCGTGAGCTTAGCAGCACAACAACTAGCATGAGAGGGACACTGTGTTATGTTGCACCAGAGTATGGTGGATGTGGGTTCTTAATGGAGAAGGCTGACATTTACAGCTTTGGGGTTCTGATTCTTGTAATTGTGTCAGGTAGAAGACCATTACATGTTCTTGCATCTCCCATGAAGCTAGAGAAAGCTAACTTGATTAGCTGGTGTAAACACTTGGCTCAAGCAGGTGACATTTTGGAGCTGGTAGATGAGAGATTGAAAGAAGATTACAATAAGGAACAAGCAAGCTTGTGTATAAACTTGGCTCTCACTTGCTTACAGAAAATTTCAGAATTGCGCCCAGATATTGGGGATATTGTTAAGATTTTGAAGGGGGAGATGGACCTTCCACCACTTCCATTTGAGTTCTCCCCTTCTCCACCTTCCAAATTATACAGCAGATCAAGAAGAAGACAGAAGAGCAATGCAGAATAG 2139 0.4165 MPSRPFPPSPSFLTKTRVLFLALTISACVVIFCSVLYFLYHLWHFLVQRAKTIPFEASAPLKLQRFSYKELKHATNDFDTANVIGKGGSGTVFRGILKDGKLVAVKRLDTLSLQTEREFQNELQILGGLRSPFLVTLLGYCVEKNKRMLVYEYMPNRSLQESLFGDGSLCLSWERRFCIILDVAKGLEFLHLGCDPPVIHGDIKPSNVLLDAEYNGRISDFGLSRIKVEGEYGIDLFSQDLGKSQELWKSQEISANLTPETPAIGTPVDSVSEVDFSLALQASSSSKNSRTCFNVGALNLNSLNYNVNIANESEIRNGNAKGKEVSTSDIGGDDWNSKFVPYDDEFSSIDHSKELTVNSSLVDDEKENGKQRGKDWWWKQDGNGELCSKDYVMEWIGSQISPSNADWDDGKNNIHGKIELGNSSPLDKPNDADGHGHQLQVFETGNTNDGVAKKESRGKKNRKKKQRNMQEWWKEEHLAELSKKSNKLKNLQTKWKKGLKVPHFDLGRRFYLCRRNDFAKEGQNECDLGEFSFRRGWKKKSTRSIGSDMWSGDLFSRELSSTTTSMRGTLCYVAPEYGGCGFLMEKADIYSFGVLILVIVSGRRPLHVLASPMKLEKANLISWCKHLAQAGDILELVDERLKEDYNKEQASLCINLALTCLQKISELRPDIGDIVKILKGEMDLPPLPFEFSPSPPSKLYSRSRRRQKSNAE* 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g02339 712 Coils Coil 474 494 - -
Rops4g02339 712 ProSiteProfiles Protein kinase domain profile. 78 687 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops4g02339 712 Gene3D Phosphorylase Kinase; domain 1 46 153 - -
Rops4g02339 712 PANTHER OS07G0586332 PROTEIN 11 707 IPR044576 -
Rops4g02339 712 MobiDBLite consensus disorder prediction 413 471 - -
Rops4g02339 712 Gene3D Transferase(Phosphotransferase) domain 1 523 684 - -
Rops4g02339 712 Gene3D Transferase(Phosphotransferase) domain 1 154 267 - -
Rops4g02339 712 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 28 - -
Rops4g02339 712 FunFam Receptor-like serine/threonine-protein kinase At4g25390 47 153 - -
Rops4g02339 712 FunFam putative receptor-like protein kinase At1g80870 154 265 - -
Rops4g02339 712 Pfam Protein kinase domain 80 228 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops4g02339 712 FunFam Receptor-like serine/threonine-protein kinase At4g25390 534 684 - -
Rops4g02339 712 SUPERFAMILY Protein kinase-like (PK-like) 58 698 IPR011009 -
Rops4g02339 712 ProSitePatterns Protein kinases ATP-binding region signature. 84 106 IPR017441 GO:0005524
Rops4g02339 712 MobiDBLite consensus disorder prediction 689 712 - -
Rops4g02339 712 SMART serkin_6 78 677 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops4g02339 712 ProSitePatterns Serine/Threonine protein kinases active-site signature. 198 210 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g02339 Rops-Chr4 50511189 50513576 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g02339 545 678 Receptor kinase-like Gene Family AT3G58690 31.111 9.77e-14 72.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XI Rops4g02339 Pkinase 4.9e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g02339 - - gmx:100800845 1155.97