Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g02334 ATGTTTGATTCTGGTTACAAGTCACAGTATATTGGAGGACAGAAGGAAAAGTTTGTAAGGTTGGATGATCTGGATTCCAATTTGTCAATGTCTTCTAGCTCAAGTGGGATGAAGAAATTAAGATTTAATTTAGATTCTTTGCCTTTGCCTTTTCGTGGTCGTGGGAAAAAAAATACATCGAAATCCTTTAGGCTAGGAATGAAGAGGGGATCAGATGGACTAAAGACATTTGGAAGATCACTCAAAAGTGGAGTGACCTGGTCAGTATTCCCAGAGGATCTTAAAGTATCAGAGAAAATGGTATTTGACCCTCAAGATAAGAACCTTCTGTACTGGAATAAGTTTTTCGAGATTCTATGTATTTTTTCTGTAGCTGTTGATCCCTTCTTCTTTTATCTTCCTTATTTCAACCACAAATCATTTTGCCTCGCCATAGATAACGAGCTAGCAAGTTTTGCAGTTACATTGAGAACAATAATGGATGTCATTTATCTCCTCCGCATAAGTTTTCAGTTCCGCACTGCCTACATTGCACCTTCATCTCGGGTATTTGGACGAGGTGAACTTGTCATAGATCCTGCAAAGATTGCCAAGAGATATTTACAACGTTACTTCTTTGTTGACTTCATTTCTGTACTGCCTATGCCACAGATTATAGTGTGGAAATATCTTTACAGCGCAAGACGTGTGGAGGTATTGGCCACAAAAACGGCACTCTTGAGAATTGTCATCATGCAATATTTTCCAAGATTTATACGCTTTCTACCATTAGCTTCAGAAGTTAAAAAGACGGCTGGTGTATTTTCTGAAAATGCATTACTCGGTGCCATGTACTATTTGATCTGGTATATGCTTGCAAGCCATATAACGGGCTCTGTCTGGTACTTACTAGCCATAGAACGTAACGACACATGCTGGAAGAATGCCTGTAAAGAAGTTGAAGGATGCAATACACATTTCTTGTATTGTGGGAGTTCAAATAAGCATCTTTCAGGGTATGAAAGTTGGAGAAATGTCAGCGAGACTGTTCTTAAAAGTCGTTGCTTTATTGAGGATGATAACTCAGCATTTAATTATGGAATCTTCTCTCAAGCTATTGAGTCTGATATTGTTGCTTCCATAGAAGTCTTTCCTAAATTTTGTTACTGTTTATGGTGGGGCCTTCAAAACTTGAGTACACTTGGTCAGGGGCTTCTAACCAGTACTTACCCTGGAGAGGTTATGTTTTCCATAGTAATAGCTATTATGGGGCTTGTCCTTTTTGCTCTTCTGATTGGAAACATGCAGACCTACCTTCAATCAATGTCAGTTCGTCTTGAGGAAATGAGGATCAAAAGACGTGACTCTGAGCAGTGGATGCATCATCGCTTGCTTCCTCCAGAGCTAAGGGAAAGAGTAAGACGCTATGACCAATACAAGTGGCTCAACACCAGAGGAGTAGATGAAGAAAGCTTGGTTCAGAGTCTTCCAAAAGATATCAGGAGAGATATCAAACGGCATCTTTGTCTGAATTTGGTCAGAAGGGTTCCTCTCTTTGCTAACATGGATGAACGCTTGCTTGATGCTATATGTGAGCGATTGAAGCCTAGTTTATACACAGAGAGCACTTACATAGTGAGGGAAGGGGATCCAGTTAATGAGATGCTCTTCATCATACGCGGTCGTTTAGAGAGTGTTACTACAGATGGTGGAAGAAGTGGATTTTTCAACAGAGGACTTTTGAAGGAAGGTGACTTCTGTGGAGAAGAGTTACTAACATGGGCACTGGACCCCAAATCTGCTGCTAACTTGCCATCATCTACTAGGACAGTGAAAGCCATGAATGAAGTGGAGGCATTTGCTTTGGAGGCAGAAGAGTTGAAGTTTGTTGCTTCACAGTTTAGGCACATTCACAGTAGACAGGTTCAGCAGACCTTCCGTTTTTACTCTCAGCAATGGAGAACATGGGCTGCAATCTACATTCAAGCTGCATGGAGGAGGCATTTAAGGAGAAAAGTTGCAGAACAACGTAGGAAGGAGGAAGAAGAACTAGGTGAATTTGATTATGAAGGAGGTGATGATTCTGCAAGGGCCTTGGTTCCACGTACTGAAAGTTCATCTAGGTTCGGACTTGGTTCAACCGTCTATGCTTCTCGTTTCGCTGCTAATGCCCTTCGTGGTCATAGGCATCGTGCTTCAAGTTCCAGGGGCCTAATGAAAATCCCAAAGCCCCAAGAACCTGACTTCAGTGCTCTTGATGAAGAGTGA 2247 0.4148 MFDSGYKSQYIGGQKEKFVRLDDLDSNLSMSSSSSGMKKLRFNLDSLPLPFRGRGKKNTSKSFRLGMKRGSDGLKTFGRSLKSGVTWSVFPEDLKVSEKMVFDPQDKNLLYWNKFFEILCIFSVAVDPFFFYLPYFNHKSFCLAIDNELASFAVTLRTIMDVIYLLRISFQFRTAYIAPSSRVFGRGELVIDPAKIAKRYLQRYFFVDFISVLPMPQIIVWKYLYSARRVEVLATKTALLRIVIMQYFPRFIRFLPLASEVKKTAGVFSENALLGAMYYLIWYMLASHITGSVWYLLAIERNDTCWKNACKEVEGCNTHFLYCGSSNKHLSGYESWRNVSETVLKSRCFIEDDNSAFNYGIFSQAIESDIVASIEVFPKFCYCLWWGLQNLSTLGQGLLTSTYPGEVMFSIVIAIMGLVLFALLIGNMQTYLQSMSVRLEEMRIKRRDSEQWMHHRLLPPELRERVRRYDQYKWLNTRGVDEESLVQSLPKDIRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLYTESTYIVREGDPVNEMLFIIRGRLESVTTDGGRSGFFNRGLLKEGDFCGEELLTWALDPKSAANLPSSTRTVKAMNEVEAFALEAEELKFVASQFRHIHSRQVQQTFRFYSQQWRTWAAIYIQAAWRRHLRRKVAEQRRKEEEELGEFDYEGGDDSARALVPRTESSSRFGLGSTVYASRFAANALRGHRHRASSSRGLMKIPKPQEPDFSALDEE* 749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g02334 748 MobiDBLite consensus disorder prediction 720 748 - -
Rops4g02334 748 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 93 742 - -
Rops4g02334 748 ProSiteProfiles IQ motif profile. 647 676 IPR000048 GO:0005515
Rops4g02334 748 CDD CAP_ED 511 642 IPR000595 -
Rops4g02334 748 SUPERFAMILY Voltage-gated potassium channels 104 433 - -
Rops4g02334 748 Gene3D - 112 436 - -
Rops4g02334 748 ProSiteProfiles cAMP/cGMP binding motif profile. 511 641 IPR000595 -
Rops4g02334 748 Gene3D Jelly Rolls 509 629 IPR014710 -
Rops4g02334 748 Gene3D Helix hairpin bin 438 502 - -
Rops4g02334 748 SUPERFAMILY cAMP-binding domain-like 441 631 IPR018490 -
Rops4g02334 748 Pfam Cyclic nucleotide-binding domain 532 621 IPR000595 -
Rops4g02334 748 FunFam Cyclic nucleotide-gated ion channel 1 438 502 - -
Rops4g02334 748 FunFam Cyclic nucleotide-gated ion channel 1 509 627 - -
Rops4g02334 748 Pfam Ion transport protein 111 438 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Rops4g02334 748 SMART cnmp_10 511 642 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g02334 Rops-Chr4 50462490 50468324 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g02334 6 744 Ion Channels AT1G15990 70.013 0.0 1025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g02334 K05391 - gmx:100810453 1248.8