Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g02324 ATGGATTGTTCATCATGGATTAACACATCTTTGGATCTCAACATAAATCCTCATCCCAAGGAGGTAGAAAGCAAACTTTTCTCTCTGGGGATGAAGAAGGTTTCTGTGAAAGAAGAGTCTACCGATGGCTTGGAGAAGGAACTGAAGAGGGTGACTGCAGAAAACAAGAAATTGGTGGAAATGCTCTCAGTGGTGTGTGAGAACTACAACACTTTGAGAAGCCACTTGATGGAATATATGAGGAAAAATCCTGAAAAGGAGCTCAGCCCATCATCAAAGAAAAGGAAATCTGAAAACAGCAATAACAATAGTAATCTGATGGGAATTAACAACGGAAACTCTGAGAGCAGCTCTACTGATGAAGAATCTTGCAAGAAACCAAGGGAAGAAGAAACCATCAAAGCCAAAATTTCTAGAGTTTATGTCAGGACAGAAGCATCTGATACAGGCCTTATTGTGAAAGATGGATACCAATGGAGGAAATATGGGCAAAAGGTGACCAGAGATAACCCTTCTCCAAGAGCATATTTCAAATGCTCTTTTGCTCCAAGCTGCCCTGTCAAAAAGAAGGTGCAAAGAAGTGTGGATGATCAATCTGTCCTTGTTGCTACTTATGAAGGGGAGCACAATCATCCCCAACCTTCTCAAATGGAAGCAACTGGCCGTAGTGTGACTCTTGGTTCAGTACCTTGTTCAGCATCTCTCAGCTCTTCAGCACCAACAGTTGTTACCCTTGACTTGACAAAATCTAAGAAGAATATAGAACCCAAAATAGATTCATCTAAAGTACCACAGAATTTGGTGCAACAGATGGCTAGTTCTTTGACCACGGATCCCAATTTCAGAGCAGCACTTGTTGCAGCCATCTCAGGAAGGCTGTTGCACAAGAATTAA 894 0.4172 MDCSSWINTSLDLNINPHPKEVESKLFSLGMKKVSVKEESTDGLEKELKRVTAENKKLVEMLSVVCENYNTLRSHLMEYMRKNPEKELSPSSKKRKSENSNNNSNLMGINNGNSESSSTDEESCKKPREEETIKAKISRVYVRTEASDTGLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSVDDQSVLVATYEGEHNHPQPSQMEATGRSVTLGSVPCSASLSSSAPTVVTLDLTKSKKNIEPKIDSSKVPQNLVQQMASSLTTDPNFRAALVAAISGRLLHKN* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g02324 297 MobiDBLite consensus disorder prediction 83 130 - -
Rops4g02324 297 SMART WRKY_cls 153 213 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops4g02324 297 SUPERFAMILY WRKY DNA-binding domain 151 214 IPR036576 GO:0003700|GO:0006355|GO:0043565
Rops4g02324 297 ProSiteProfiles WRKY domain profile. 152 214 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops4g02324 297 Pfam WRKY DNA -binding domain 154 212 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops4g02324 297 Coils Coil 41 61 - -
Rops4g02324 297 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 35 293 IPR044810 GO:0003700
Rops4g02324 297 MobiDBLite consensus disorder prediction 95 118 - -
Rops4g02324 297 FunFam WRKY transcription factor 40 138 215 - -
Rops4g02324 297 Gene3D WRKY domain 135 215 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g02324 Rops-Chr4 50381010 50382945 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g02324 4 297 WRKY Transcription Factor Family AT1G80840 54.369 2.07e-100 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Rops4g02324 WRKY 2e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g02324 - - gmx:100807966 452.981