Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g02322 ATGGATCCACAAAACGAACATAGCAGTAGCAGCAACCCCAGAAACATAATCTTCAACAAGTACGAGATGGGGCGGGTTCTAGGGCAGGGAAACTTCGCAAAAGTCTATCATGGTAGAAACCTAGTAACCAACGAAAGCGTGGCCATCAAGGTGATTAAGAAAGAGAAACTGAAGAAAGAGAGGCTTGTGAAGCAGATAAAGCGAGAGGTTTCAGTTATGCGTTTGGTGCGTCACCCTCACATCGTGGAACTTAAGGAAGTGATGGCCACAAAGGGAAAGATCTTCCTTGTTATGGAGTATGTCAAAGGTGGTGAACTCTTCTCCAAAGTTGCAAAGGGAAAACTCAAAGAAGAAGTTGCAAGGAAGTACTTTCAACAACTCATAAGTGCTGTAGATTTTTGTCACAGCCGTGGTGTTACACACCGTGATCTTAAGCCTGAAAATCTTCTCTTGGATGAAAATGAAGATCTTAAAGTTTCCGACTTTGGCCTTTCTGCTTTGCCGGAGCAACGCCGTTCTGATGGGATGCTTGTAACACCATGTGGGACTCCTGCTTATGTTGCACCAGAAGTGTTGAAGAAAAAGGGCTATGATGGTTCCAAGGCTGATATATGGTCTTGTGGGGTGATTCTCTATGCTTTGCTTTGTGGGTATTTACCCTTTCAAGGTGAGAATGTTATGAGGATTTATAGGAAGGCTTTTAAGGCTGAATACGAGTTACCTGATTGGATTTCACCACAAGCCAAGAACTTGATCTCAAAACTGCTTGTTGCTGATCCTGAAAAGAGGTATTCAATTCCTGATATCATGCAAGATCCTTGGTTCCAAATTGGGTTCATGAGACCTATTGCTTTTTCTATGAAAGAGTCTGCTGTTGAAGATAACATTGATTTCAATGAAGAAGGTGAAGAAGAGGTTCCTGATTTGGTTGGGTCAATGGCAAAACCTGCTCGTCCTTTTTACAATGCGTTTGAGATCATTTCCTCTTTGTCACATGGCTTTGATCTTAGGAATTTGTTTGAGACTAGGAAGAGGTCTCCTTCTATGTTTATTTCAAAGTTTTCAGCTTCTGCAGTGTTGGCAAAGCTTGAGGGTGTGGCGAAGAAGCTTAACTTTAGGATCACGGGGAAGAAAGAGTTCACGGTGAGAATGCAAGGGACTAAAGAGGGGAGAAAGGGGAAGCTGGCTATGACGGTGGAGGTGTTTGAGGTGGCACCGGAGGTGGCAGTGGTTGAGTTTTCTAAGTCTGCCGGAGACACGTTGGAGTACATGAAGTTCTGTGAGGAACAAGTGAGACCTTCCCTCAAAGACATTGTTTGGAGCTGGCAGGGTGACAGTAACTCCAATCAGTAA 1353 0.4375 MDPQNEHSSSSNPRNIIFNKYEMGRVLGQGNFAKVYHGRNLVTNESVAIKVIKKEKLKKERLVKQIKREVSVMRLVRHPHIVELKEVMATKGKIFLVMEYVKGGELFSKVAKGKLKEEVARKYFQQLISAVDFCHSRGVTHRDLKPENLLLDENEDLKVSDFGLSALPEQRRSDGMLVTPCGTPAYVAPEVLKKKGYDGSKADIWSCGVILYALLCGYLPFQGENVMRIYRKAFKAEYELPDWISPQAKNLISKLLVADPEKRYSIPDIMQDPWFQIGFMRPIAFSMKESAVEDNIDFNEEGEEEVPDLVGSMAKPARPFYNAFEIISSLSHGFDLRNLFETRKRSPSMFISKFSASAVLAKLEGVAKKLNFRITGKKEFTVRMQGTKEGRKGKLAMTVEVFEVAPEVAVVEFSKSAGDTLEYMKFCEEQVRPSLKDIVWSWQGDSNSNQ* 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g02322 450 SUPERFAMILY Protein kinase-like (PK-like) 17 276 IPR011009 -
Rops4g02322 450 Gene3D Kinase associated domain 1, KA1 318 441 - -
Rops4g02322 450 FunFam Non-specific serine/threonine protein kinase 14 312 - -
Rops4g02322 450 FunFam Non-specific serine/threonine protein kinase 317 440 - -
Rops4g02322 450 Gene3D Transferase(Phosphotransferase) domain 1 12 317 - -
Rops4g02322 450 FunFam Non-specific serine/threonine protein kinase 12 100 - -
Rops4g02322 450 ProSiteProfiles Protein kinase domain profile. 21 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops4g02322 450 Pfam NAF domain 320 375 IPR004041 GO:0007165
Rops4g02322 450 SMART serkin_6 21 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops4g02322 450 CDD CIPK_C 322 436 - -
Rops4g02322 450 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 10 436 - -
Rops4g02322 450 Pfam Protein kinase domain 21 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops4g02322 450 Coils Coil 49 69 - -
Rops4g02322 450 ProSiteProfiles NAF domain profile. 316 341 IPR018451 GO:0007165
Rops4g02322 450 ProSitePatterns Serine/Threonine protein kinases active-site signature. 139 151 IPR008271 GO:0004672|GO:0006468
Rops4g02322 450 ProSitePatterns Protein kinases ATP-binding region signature. 27 54 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g02322 Rops-Chr4 50292374 50294462 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g02322 16 450 CBL-interacting serine-threonine protein kinases AT5G25110 62.989 0.0 580
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Rops4g02322 Pkinase 2.4e-78 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g02322 - - lja:Lj3g3v2118210.1 749.199