LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops4g02317	ATGGAATCGATGTGTTGGTGGTGGCTTGCAACTGATTTCTGCGGCTTAGTCTTCAGCTTCAAAGGAAGGAGAGCTTGTTCTTTTAAATCAACAGGGAAAATGTCAGGTGAAGAAGGTGCGGTTGCAGCTGAGCCAGCTGCTTCGATTCCAGGTGAGCCAATGGACATCATGACTGCCTTACAACTTGTGCTCAGAAAGTCACTGGCATATGGTGGTCTTGCACGAGGCCTTCATGAAGGTGCAAAAGCTGTTGAGAAGCATGCTGCACAGCTTTGTGTTCTTGCAGAAGATTGCGACCAACCTGACTATGTTAAACTTGTCAAGGCCCTGTGTGCAGAGCACAATGTTAGCCTGCTGACAGTTCCCAGTGCAAAGACACTTGGAGAATGGGCTGGTTTGTGCAAGATTGATTCAGAAGGAAAAGCTAGGAAGGTAACTGGTTGCTCCTGTGTGGTTGTCAAGGATTTCGGGGAGGAACATGAAGCCTATAATGTTGTTCTTCAACATGTTAAATCCCATTGA	522	0.4674	MESMCWWWLATDFCGLVFSFKGRRACSFKSTGKMSGEEGAVAAEPAASIPGEPMDIMTALQLVLRKSLAYGGLARGLHEGAKAVEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVTGCSCVVVKDFGEEHEAYNVVLQHVKSH*	174

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops4g02317	173	SUPERFAMILY	L30e-like	53	171	IPR029064	-
	Rops4g02317	173	Gene3D	-	41	173	IPR029064	-
	Rops4g02317	173	ProSitePatterns	Ribosomal protein S12e signature.	59	77	IPR000530	GO:0003735\|GO:0005840\|GO:0006412
	Rops4g02317	173	Pfam	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family	59	152	IPR004038	-
	Rops4g02317	173	PANTHER	40S RIBOSOMAL PROTEIN S12	49	173	-	-
	Rops4g02317	173	FunFam	40S ribosomal protein S12	40	173	-	-
	Rops4g02317	173	PRINTS	Ribosomal protein S12E family signature	77	93	IPR000530	GO:0003735\|GO:0005840\|GO:0006412
	Rops4g02317	173	PRINTS	Ribosomal protein S12E family signature	63	76	IPR000530	GO:0003735\|GO:0005840\|GO:0006412
	Rops4g02317	173	PRINTS	Ribosomal protein S12E family signature	143	156	IPR000530	GO:0003735\|GO:0005840\|GO:0006412
	Rops4g02317	173	PRINTS	Ribosomal protein S12E family signature	118	139	IPR000530	GO:0003735\|GO:0005840\|GO:0006412

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops4g02317	Rops-Chr4	50244633	50248201	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops4g02317	49	173	Cytoplasmic Ribosomal Protein Gene Family	AT2G32060	73.600	9.48e-65	193

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Rops7g00080	7	1182278	1185185	Rops4g02317	4	50244633	50248201	PCT