Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g02312 ATGGATCTTCTAAGGCCAGAGCCATGCCCATCTGAAAATTTGAACATCATCTCATTTTCAGAGACTGTGCAGTGCCAAAAACCTTCTATGGATACTCAAACAGAGAGGAGACAGACAGAAAAGGAAGATAAAAAACACCAACATGACTCAGCTCCTCATCTTCTACTAGATCTGAGTCTCTCCAGCAAGGATTCAGGTGATGACTCAAAGCCAGAACTCAACCTCCTCAATTGTTTCCATACAAATTTATCCGAAAACTCATCAGAATCTAGTCATGAAAATGAACTGGATCCCCGAGTTTTCTCATGCAACTACTGCCAGAGAAAATTTTATAGTTCCCAGGCACTTGGGGGACATCAGAATGCACACAAGCGTGAGAGAACTTTGGCAAGAAGAGGATACAAAGCTGGTGCTGCAATTTCATTAGATTTTGGACAAAGGTACTCCAGTATGGCTTCACATGGCTTATGTAACAAATCACTTGGAATTCAGGTGCATTCTATGATTAACAAACCTTCTTACCAAACACCCATTTTTGGCCAAAATGGGTGGCAGAGGCAACTGTTGTCTTTGGATTCACAACCAGCAATTGGGAAGCTGACATCCGGCAATTTTCATGTGGGGACAGAAACTGAAACATCCTTGGCCGGTGGCATTCCAAGGTTTGGCAAGTTTTCTACAAGGCTGGCAACCGAGGGATTTGGAGGTTACTGGTTGGATAGCACTAACCATTTGAAGTCTAAACAAGAGAAGTTGCAGAAGCTTGACTTGTCTCTCAAGCTCTAA 786 0.4288 MDLLRPEPCPSENLNIISFSETVQCQKPSMDTQTERRQTEKEDKKHQHDSAPHLLLDLSLSSKDSGDDSKPELNLLNCFHTNLSENSSESSHENELDPRVFSCNYCQRKFYSSQALGGHQNAHKRERTLARRGYKAGAAISLDFGQRYSSMASHGLCNKSLGIQVHSMINKPSYQTPIFGQNGWQRQLLSLDSQPAIGKLTSGNFHVGTETETSLAGGIPRFGKFSTRLATEGFGGYWLDSTNHLKSKQEKLQKLDLSLKL* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g02312 261 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 1 261 IPR044246 GO:0009788
Rops4g02312 261 MobiDBLite consensus disorder prediction 33 52 - -
Rops4g02312 261 FunFam Zinc finger protein 2 79 147 - -
Rops4g02312 261 SUPERFAMILY beta-beta-alpha zinc fingers 98 128 IPR036236 -
Rops4g02312 261 Gene3D Classic Zinc Finger 80 143 - -
Rops4g02312 261 ProSiteProfiles Zinc finger C2H2 type domain profile. 101 128 IPR013087 -
Rops4g02312 261 ProSitePatterns Zinc finger C2H2 type domain signature. 103 123 IPR013087 -
Rops4g02312 261 MobiDBLite consensus disorder prediction 25 53 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g02312 Rops-Chr4 50209879 50210905 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g02312 1 261 C2H2 Transcription Factor Family AT5G10970 39.362 2.26e-40 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Rops4g02312 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g02312 - - gmx:102666245 327.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops4g02312 4 50209879 50210905 Rops4g02312 4 50209879 50210905 ECH