Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g02285 ATGAACGGCGAGATCTTCTCACACACGACCAAAACCACCACCACCACCACCACCACTTTCTTTTTTCCCAAACCCAAAGAAGTTCACCATGCAACGGAATCACATGAGCCATTACGAAAAGTGTGCTTCCCATTTCAACCACTTGCTTCTCACGAAACAAGAAACGAAACGACCCTTGAAGGAATCGCAGCTGTTGTCGGAGAACACGTCCTCTTTGGACCCAACCACCGCAAAACGACACCGTTTTCGGGTTCTGAGCCAGTGACACCGGAGAAGGAGGAGGAGAATGAAAGTAGCATCTCCGTGAAGAAGAGCTACAGAGGAGTGAGGAAGAGACCATGGGGGAGGTGGTCAGCGGAGATACGCGACCGAATCGGTCGGTGCCGCCACTGGCTTGGAACCTTCGACACCGCCGAGGAGGCGGCGCGTGCGTACGACGCAGCTGCCAGGCGCTTGAGAGGCTCAAAGGCTCGAACCAACTTCAAGATACCCTCGGTGTTGCCACTGTTATCACCACCTTCAACCTCGTCTTCTTCGTCCTCGGAACCTAAAACGACACGTAACAGCACTAGGAAGTGCTCTGTGGATGTGGTTACCTCTGTGGAACAATTGTTCAGTGGTGTGCCTCAAGTTAGAAGAGAAAGAGATAGTCATTGTAATGGCAATGTGAAGCTGGGTGTGAACTTTGGTAATAGAAGCACTAGAATGGTGGTGTAG 717 0.516 MNGEIFSHTTKTTTTTTTTFFFPKPKEVHHATESHEPLRKVCFPFQPLASHETRNETTLEGIAAVVGEHVLFGPNHRKTTPFSGSEPVTPEKEEENESSISVKKSYRGVRKRPWGRWSAEIRDRIGRCRHWLGTFDTAEEAARAYDAAARRLRGSKARTNFKIPSVLPLLSPPSTSSSSSSEPKTTRNSTRKCSVDVVTSVEQLFSGVPQVRRERDSHCNGNVKLGVNFGNRSTRMVV* 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g02285 238 CDD AP2 104 163 IPR001471 GO:0003700|GO:0006355
Rops4g02285 238 ProSiteProfiles AP2/ERF domain profile. 105 162 IPR001471 GO:0003700|GO:0006355
Rops4g02285 238 MobiDBLite consensus disorder prediction 76 100 - -
Rops4g02285 238 Pfam AP2 domain 105 154 IPR001471 GO:0003700|GO:0006355
Rops4g02285 238 SMART rav1_2 105 168 IPR001471 GO:0003700|GO:0006355
Rops4g02285 238 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 91 189 - -
Rops4g02285 238 MobiDBLite consensus disorder prediction 169 193 - -
Rops4g02285 238 Gene3D AP2/ERF domain 104 163 IPR036955 GO:0003700|GO:0006355
Rops4g02285 238 SUPERFAMILY DNA-binding domain 105 162 IPR016177 GO:0003677
Rops4g02285 238 FunFam Ethylene-responsive transcription factor 2 104 163 - -
Rops4g02285 238 PRINTS Ethylene responsive element binding protein signature 106 117 IPR001471 GO:0003700|GO:0006355
Rops4g02285 238 PRINTS Ethylene responsive element binding protein signature 128 144 IPR001471 GO:0003700|GO:0006355
Rops4g02285 238 MobiDBLite consensus disorder prediction 164 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g02285 Rops-Chr4 49750513 49751229 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g02285 42 168 AP2-EREBP Transcription Factor Family AT1G80580 55.906 6.07e-29 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Rops4g02285 AP2 1.8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g02285 - - gmx:102660200 203.371
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops4g02285 4 49750513 49751229 Rops4g02285 4 49750513 49751229 ECH