Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g02284 ATGGGGGAGCCATGCCAGAATTGGTTCTCTGAAATGGAAATACAAGGTGATGAATTCTTTAACCAACGCAACAAGATTGACTCATTGGATGATGAAGATCAGATCTTTAGAGAGATCATGCATCAACCAGCTTTCTCTTCTGACAGTGAAACTCACTCTCCCATGAATCAAAATAAATCCATCACCAACAACGGGCGTGGAAGCAACAACCTTGTGATAAAGAGCAATAGTTCCAACTTCATCTTCTCATCACAACAACATGCACCTGCCACAGCCACTTCCCCAACAACATCCTACATTCTCTCTTTCGGTGACTCCACAGTTGTAGCAGCTACCCGCCAAACCTGCGGAGGAAAACAGCCCTTGCACGACCAAGTAGGTGGTGGCGGCACACGTGCTCCTTCAAAACATGACTTGCAACCTATAAGGGCCAACCAAACAACGAAGAAAAGCAGAAGCTCTTCGGAGACATTAGACCACATAATGGCAGAGAGAAAGAGGAGAAGGGAAATAACAGAGAGGTTCATAGCACTTTCAGCCACTATACCTGGTTTGAAGAAGATTGACAAGGCCACAATACTTGGCGAAGCAATCACTCATGTGAAAAGACTTCAAGAACGTGTGAGAGAGCTAGAAGAACAAAGTAAGAAGACAAGTGTAGAGTCAGTGTCATTCATTCGGAAATCCCACCTTACAACTGACAAAGGCACCACCTCTAGTGCAATGAACTCTGATGATTGCCATAGAACCAAAGAAGCACTCCCTACTGTGGAAGCAAGGGTCTTTAAAAGGGACATACTTCTCCGGATTCACTGCAAGATAGAAAGTGGCATTTTGCTCAAAATTTTGGACAATCTTAAAAATCTTGATCTCTCCACAATCAGCAATAGTGTCATGCCATTTGGGAATTCTACTCTTGACATTAGCATTATTGCTCAGATGGGTGAAAAATTCAACGTGACAATGAACGATCTAGTGAATAACCTGAGACTGGCTCTCTTGGAGTCATCTGAAAAACCACAGTGA 1026 0.4347 MGEPCQNWFSEMEIQGDEFFNQRNKIDSLDDEDQIFREIMHQPAFSSDSETHSPMNQNKSITNNGRGSNNLVIKSNSSNFIFSSQQHAPATATSPTTSYILSFGDSTVVAATRQTCGGKQPLHDQVGGGGTRAPSKHDLQPIRANQTTKKSRSSSETLDHIMAERKRRREITERFIALSATIPGLKKIDKATILGEAITHVKRLQERVRELEEQSKKTSVESVSFIRKSHLTTDKGTTSSAMNSDDCHRTKEALPTVEARVFKRDILLRIHCKIESGILLKILDNLKNLDLSTISNSVMPFGNSTLDISIIAQMGEKFNVTMNDLVNNLRLALLESSEKPQ* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g02284 341 SMART finulus 161 210 IPR011598 GO:0046983
Rops4g02284 341 Pfam Helix-loop-helix DNA-binding domain 160 205 IPR011598 GO:0046983
Rops4g02284 341 MobiDBLite consensus disorder prediction 118 160 - -
Rops4g02284 341 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 155 204 IPR011598 GO:0046983
Rops4g02284 341 MobiDBLite consensus disorder prediction 44 72 - -
Rops4g02284 341 Coils Coil 194 221 - -
Rops4g02284 341 Gene3D - 152 225 IPR036638 GO:0046983
Rops4g02284 341 PANTHER BHLH TRANSCRIPTION FACTOR 40 335 - -
Rops4g02284 341 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 158 222 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g02284 Rops-Chr4 49731460 49733321 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g02284 151 333 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 45.355 1.99e-45 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops4g02284 HLH 1.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g02284 - - gmx:100777846 444.891