Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g02283 ATGCTAATGGAGGACTCATGGGAAAATTGGCATCTTCATATGGAAATGGATTGTGTTGATGATGATTATTTCTTAGACAAGTGCCACACTGAAGATGATGAGTTCCTCAGAGAGATCCTGTTGCAGCCACCAGCTTTCTCTTCTGAGAGTGAAAGTGATAACTCACTTCATACTTCTTCCACCGTCCAGAACAATTCCGTCGCCGTCGCCGCCGTAGATGGCGGTGTTGGGTTGGAGCAGAGGCATGGGAGCCTGGTCAAAAGTGACAGCTCAAATTCAATAGTGTCTTCTCAACTTGGTTCAAAGAGGCCTCGTCGTTCCTCTTCTCCAAAGACTTACATTTTGTCTTTTGATAACTCAACTATGATACCAGCTACCCCTGAACCTTGCTTCAATTATGACCAATCCTTAGGTAGTAAGGGAAGATGTTGTTCTGATTCTCCTTTACCTTCTAAACGGACCCTGGAAACCCAAAACACTGAACCAAGAACAAGGCCCAATCAGGCAACAAAGAAGGCAAGGACCACTTCTCAAACCATTGATCACATAATGGCAGAGAGAAAAAGGAGACAGGAACTGACAGAGAGGTTCATAGCACTTTCAGCCACGATTCCTGGCCTGAGCAAGACGGACAAGGCGTCGGTACTTCGAGCAGCGATCGATTACGTGAAACAACTTCAAGAACGTGTGCAGGAACTAGAAAAACAGGACAAAAAGAAGGGTGCAGAGACTGTGATAGTCATAAAGAAACCCGATCTATTATGTGGAAATGAAGACACCACATCGAGTGAAACTAGTTCTGATGATTGTAGCATCCTCCCTGAGATTGAAGCAAGAATCTTGGGGAAAGACGTGCTCATTGAGATCCACTGTGAGAAAGAAAATGGCATTGAGCTCAAAATACTTGACCACCTTGAAAATCTTCAGCTCTGTGTCAATGGTAGCAGTGTCTTGCCATTTGGGAATTCAGCTCTTTCCATTACTATTGTAGCTCAGATGGGTGAGGCGTGCGAAATGACAGTTAATGATCTAGTTAAAAGTCTTAGACAATTGCTCTTGAAGTCACAAATGGTCAGCGACAGTGATCCGTACTAG 1095 0.4429 MLMEDSWENWHLHMEMDCVDDDYFLDKCHTEDDEFLREILLQPPAFSSESESDNSLHTSSTVQNNSVAVAAVDGGVGLEQRHGSLVKSDSSNSIVSSQLGSKRPRRSSSPKTYILSFDNSTMIPATPEPCFNYDQSLGSKGRCCSDSPLPSKRTLETQNTEPRTRPNQATKKARTTSQTIDHIMAERKRRQELTERFIALSATIPGLSKTDKASVLRAAIDYVKQLQERVQELEKQDKKKGAETVIVIKKPDLLCGNEDTTSSETSSDDCSILPEIEARILGKDVLIEIHCEKENGIELKILDHLENLQLCVNGSSVLPFGNSALSITIVAQMGEACEMTVNDLVKSLRQLLLKSQMVSDSDPY* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g02283 364 SMART finulus 183 232 IPR011598 GO:0046983
Rops4g02283 364 MobiDBLite consensus disorder prediction 142 178 - -
Rops4g02283 364 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 178 238 IPR036638 GO:0046983
Rops4g02283 364 MobiDBLite consensus disorder prediction 84 112 - -
Rops4g02283 364 Gene3D - 173 245 IPR036638 GO:0046983
Rops4g02283 364 Pfam Helix-loop-helix DNA-binding domain 182 227 IPR011598 GO:0046983
Rops4g02283 364 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 177 226 IPR011598 GO:0046983
Rops4g02283 364 MobiDBLite consensus disorder prediction 150 178 - -
Rops4g02283 364 Coils Coil 216 243 - -
Rops4g02283 364 PANTHER BHLH TRANSCRIPTION FACTOR 48 354 - -
Rops4g02283 364 MobiDBLite consensus disorder prediction 82 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g02283 Rops-Chr4 49712403 49714199 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g02283 168 352 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 47.120 8.64e-46 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops4g02283 HLH 1.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g02283 - - aprc:113857138 449.514