Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g02281 ATGGACACAAACTTAGGTGCAAGCAAGGATAAGAGTCTAAATTCTGAATTGTGGCATACATGTGTGGAGCCCTTGGTGTCCCTACCAGCTGCAGGGATTTGTGTGGTTTACTTCCCTCAGGGTCAGGGTGAACAGGTTGTTGCCATAACTAATAGAGAAGTTGATGGCCACGTACCTAATTACCCGAGTTCGCCACCGGTGTCGATTTGCCAACTTCACGATGTCACAATGCATGTTGATGATGAAACAGGTGAAGTATATGCTCAAATGATGCTTCGGTCACTGACTCCGCGAGAGCAAAAGGATACATTTCTTCCTGGAGTTGGGCTTTCCAATTTTCCTCCATTGGATTTCTCCCAACAACCTCCAGCACAAGAGCTAATTGCTAGGGGTCTCCATGATGTGGAATGGAAGTTTAGACATATTTTTCGGGGACATCCAAAACGATGCCTTCTTACAGCAGGTTGGAGTATATTTGTTAGTGCCAAAAGACTTGTGGTCGGAGATTCTGTCCTTGTTATTTGGAATGAGAAGAATCAGCTTCTTCCGGGCATACGTCGAGCCAGCAGACCACAAGTTGTAATGTCATCGTCATTTCCATCCAGTGATAGTATGCACATTGGACTTCTTGCAGTCGCTACCTCTACGCAACGTCAAATATCAAACTCATCAGCGCATGGAGCCCACATAGTTGAGAATTTGAAGTTTAAGGAAAGGTGTGATGAGCTTGGAGTTAAGGTTTTGAGGGTGGTGAACGTGCATGGTATGGTACCAAGCGTGCCTGGGATAATAACCAATGAGAAGTTTGTAGATGATGCTTTGTCTTTTCATTGGAGTTATGCACGTTGGGAAAGAACCTGCGTTGGATCACTTGCATAG 879 0.4505 MDTNLGASKDKSLNSELWHTCVEPLVSLPAAGICVVYFPQGQGEQVVAITNREVDGHVPNYPSSPPVSICQLHDVTMHVDDETGEVYAQMMLRSLTPREQKDTFLPGVGLSNFPPLDFSQQPPAQELIARGLHDVEWKFRHIFRGHPKRCLLTAGWSIFVSAKRLVVGDSVLVIWNEKNQLLPGIRRASRPQVVMSSSFPSSDSMHIGLLAVATSTQRQISNSSAHGAHIVENLKFKERCDELGVKVLRVVNVHGMVPSVPGIITNEKFVDDALSFHWSYARWERTCVGSLA* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g02281 292 CDD B3_DNA 125 179 IPR003340 GO:0003677
Rops4g02281 292 Pfam B3 DNA binding domain 121 188 IPR003340 GO:0003677
Rops4g02281 292 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 11 102 IPR044835 GO:0003677|GO:0006355|GO:0009725
Rops4g02281 292 Gene3D - 108 188 IPR015300 -
Rops4g02281 292 SMART B3_2 87 189 IPR003340 GO:0003677
Rops4g02281 292 SUPERFAMILY DNA-binding pseudobarrel domain 111 212 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g02281 Rops-Chr4 49685328 49686422 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g02281 9 210 B3 DNA Binding Superfamily AT1G30330 61.702 3.65e-89 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Rops4g02281 B3 2.3e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g02281 - - vun:114193813 303.138