Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g02280 ATGAACTGTGACGATGATTATTTCATAGACATGTGCCACACCGACGATGACGAATTCCTCAATGAGATTCTGCTGCAGCCAGCAGCGTTTTCGACTGAAAGTGAAAATAATCACTCATTTAACGCTTCGTTCACTGTCCAAAACAATACCGTCGCGGCCGCCGCCGTAGACGGTGGTGTTTTACCATCTGAAGGGTTGGAGCAGAGGCCTCTTTGTTCTTCTTCTCCAAAGACTTACATTCTGTCTTTCGAAGACTCAACCATGATACAAGCTACTCCCGAATCTTATGACCAATCACTAGGTAGCCATGCAAGACGTTCTTCTGATTCTTCTTTGCCCTCAAAACTGACCCTGGAAACCCAAAACCCTGAGGTAGCAAAGAAGGCCAGCAGCACCACTTCTCATACCATTGAACACATAATGGCAGAGAGAAAAAGGAGACGGGTCGTGACAGAAAGGTTCATAGCACTTTCAGCCACGATTCCTGGCTTGAGCAAGAGGGACAAGGTATCTGTACTTGGAGCAGCGATTGATTATGTGAAACAACTTAAAGAGCGTATACAGGAACTAGAAAAACAAGACACAAAGAGGGGTGTAGAGACAGTGACAGTTATCAAGAAACCCGGTCTTTGTGGAAATAAAGACAGCACATCGAGGGAAACAAGCTCTGATGATGGTAGCATCCTCCCTAAGATTAAAGCAAGAGTGTCGGGAAAGGACGTGCTCATTGAGATCCACTGTGAGAAAGAAAATGGCATTGAGCTCAAAATACTTCACCACCTTGAAAATCTTCAGCTCTATGTCAACGGTAGCAGCGTCTTGCCATTTGGAAATTCCGCTCTTTTCATTACTATTATCGCTCAGATGGGTGACACGTACGAAATGAAGCTGAAGGATCTGGTGAAAAGCCTTAGACAAGTGCTCTTGAAGTCGCAAATGGTGAACGATATTGATCCGTCCTAG 963 0.4496 MNCDDDYFIDMCHTDDDEFLNEILLQPAAFSTESENNHSFNASFTVQNNTVAAAAVDGGVLPSEGLEQRPLCSSSPKTYILSFEDSTMIQATPESYDQSLGSHARRSSDSSLPSKLTLETQNPEVAKKASSTTSHTIEHIMAERKRRRVVTERFIALSATIPGLSKRDKVSVLGAAIDYVKQLKERIQELEKQDTKRGVETVTVIKKPGLCGNKDSTSRETSSDDGSILPKIKARVSGKDVLIEIHCEKENGIELKILHHLENLQLYVNGSSVLPFGNSALFITIIAQMGDTYEMKLKDLVKSLRQVLLKSQMVNDIDPS* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g02280 320 Pfam Helix-loop-helix DNA-binding domain 138 184 IPR011598 GO:0046983
Rops4g02280 320 SMART finulus 140 189 IPR011598 GO:0046983
Rops4g02280 320 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 136 194 IPR036638 GO:0046983
Rops4g02280 320 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 134 183 IPR011598 GO:0046983
Rops4g02280 320 Gene3D - 133 205 IPR036638 GO:0046983
Rops4g02280 320 MobiDBLite consensus disorder prediction 94 137 - -
Rops4g02280 320 PANTHER BHLH TRANSCRIPTION FACTOR 54 311 - -
Rops4g02280 320 Coils Coil 173 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g02280 Rops-Chr4 49659667 49662956 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g02280 126 308 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 45.699 1.09e-43 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops4g02280 HLH 8.5e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g02280 - - aprc:113857138 324.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g00093 7 1381131 1385852 Rops4g02280 4 49659667 49662956 PCT