Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g02279 ATGAAAACACGCCCCCATTATTATTACTACTTCACTTCTCATATGGAGGACTCATGGGAAAACTGGCTCTCCCATTTGGGAGTGAATGGGAATGGTGCCACCATCACCAGTACCATGGTCAGCAGTTTATCCTTTGAAGATATGGCAATCTTCGAAGGTCAGTATTGTGATAGCTCTAATGCTATGGGGACAAAACAGGAACACTCTTACTTGAGGACCAGCCAAGAGGGATTAGGAAGTTGGTGTTCACCAACTTTGACCTCGAAAAGGGTTCATGAGTTGGAGCCAAGGGAGAACAGAGGAACAAAGAAGGCCAGAACCTCTTCTGAGGCACTACATCACATAATGTCAGAGAGAAAAAGAAGACGGGAAATAGCTGAGAAATTCATAGCACTTTCAGCTACTATACCTGGCTTGAAGAAGATAGACAAGGCCTCTATACTTCAAGAAGCCATTAATTATGTGCGACAACTTCAAGAACGTATAGCAGAGCTGGAAAAAGAGTCTGAGAAGAGAAGTATCAAGTCATTGATCATCACGAAATCACACTTTTGTTCGGGGACATGTGAAACAAACTCCAAAGGTTATGATGGAGCCAATGAAGTGATCCCTGAAGTCAAAATAAGATGCTTAGAGAAGGAAGTATATATTAGAATCCATTGTGAGAAACGAAAGGGCATCATGTTCAAGCTATTAACCCTATTGAAAGATATTCATCTCTCAATAGCCAGTTGCAGCATATTGCCATTTGGAAACTTTTTTCTCAACATTATCATAATTGCTCAGATGAGGGAGGAATACACCTTGACAGTGAAGGATTTGGTGAAGAGATTGAAACAGGATCTGTTGAAGTTGTATGACATGTAA 867 0.4095 MKTRPHYYYYFTSHMEDSWENWLSHLGVNGNGATITSTMVSSLSFEDMAIFEGQYCDSSNAMGTKQEHSYLRTSQEGLGSWCSPTLTSKRVHELEPRENRGTKKARTSSEALHHIMSERKRRREIAEKFIALSATIPGLKKIDKASILQEAINYVRQLQERIAELEKESEKRSIKSLIITKSHFCSGTCETNSKGYDGANEVIPEVKIRCLEKEVYIRIHCEKRKGIMFKLLTLLKDIHLSIASCSILPFGNFFLNIIIIAQMREEYTLTVKDLVKRLKQDLLKLYDM* 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g02279 288 Pfam Helix-loop-helix DNA-binding domain 113 159 IPR011598 GO:0046983
Rops4g02279 288 PANTHER BHLH TRANSCRIPTION FACTOR 34 284 - -
Rops4g02279 288 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 112 175 IPR036638 GO:0046983
Rops4g02279 288 Coils Coil 148 175 - -
Rops4g02279 288 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 109 158 IPR011598 GO:0046983
Rops4g02279 288 Gene3D - 99 173 IPR036638 GO:0046983
Rops4g02279 288 SMART finulus 115 164 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g02279 Rops-Chr4 49650828 49653637 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g02279 15 282 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 35.439 9.26e-42 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops4g02279 HLH 1.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g02279 - - gmx:100778916 295.049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g00095 7 1396554 1398950 Rops4g02279 4 49650828 49653637 PCT
Rops4g02279 4 49650828 49653637 Rops7g00093 7 1381131 1385852 PCT