Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g02278 ATGGAAGAGTCAGGGGAAAATTGGCCTTCAAATTCTGATTTGGAAGTGGGTGATGACGTCAAAAGTTTCTTTTTTGATGATGAAGATGATGAGGGTTATTCTTTTGCTGGGACCTTAGATCCCATGATGGAAGAGACCGACAGAAAGGGGAGACAGCAGGAACTTAATGAAAGATTGCTTGCACTTTCAGCCACCATACCTGGCTTGAAGAAGACGGACGATACTTCCATCTTGGACAAAGCTAGCAAATATGTGAAACAACTTCAACAACGTGTGAGAGAGTTAGAACAAGAAGTTGAATCCCACATTTGTAGTAACAAAGGCACTACCTCTTGCGAAGTGAACTCTGATGACTATAGTGGAAAAAATGAAATGCTTCCTGAGGTTAAAGCAAGAGTTTTACAGAAGGAAGTACTGGTCATAATCCATTGTGAGAAACAAAAGGGCATCATGCTCAAAGTACTGTCCCAGCTTGAAAATCTTCATCTCTCTGTTGTCAACAGCAGCGTCTTGCGATTCGGGAAATCCACTCTTGACATCACCATTATTGCTCAGATGGGTGATGGATACAACATAACAGTGGATGAACTAGTGAAAACCCTTAGAGTAGCGATCTTGACACAGTAG 627 0.4179 MEESGENWPSNSDLEVGDDVKSFFFDDEDDEGYSFAGTLDPMMEETDRKGRQQELNERLLALSATIPGLKKTDDTSILDKASKYVKQLQQRVRELEQEVESHICSNKGTTSCEVNSDDYSGKNEMLPEVKARVLQKEVLVIIHCEKQKGIMLKVLSQLENLHLSVVNSSVLRFGKSTLDITIIAQMGDGYNITVDELVKTLRVAILTQ* 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g02278 208 SMART finulus 41 94 IPR011598 GO:0046983
Rops4g02278 208 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 49 106 IPR036638 GO:0046983
Rops4g02278 208 Gene3D - 44 103 IPR036638 GO:0046983
Rops4g02278 208 Coils Coil 78 105 - -
Rops4g02278 208 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 39 88 IPR011598 GO:0046983
Rops4g02278 208 PANTHER BHLH TRANSCRIPTION FACTOR 47 206 - -
Rops4g02278 208 MobiDBLite consensus disorder prediction 32 52 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g02278 Rops-Chr4 49612773 49618005 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g02278 49 205 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G22770 40.217 1.26e-36 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops4g02278 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g02278 - - gmx:100804953 258.455