Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g02234 ATGGTGAAATCAAAGAAATTCAGAGGTGTGAGGCAACGCCATTGGGGCTCGTGGGTTTCTGAGATTCGTCACCCCTTATTGAAAAGGAGGGTGTGGCTTGGGACATTTGAGACAGCTGAAGAAGCAGCTAGAGCATATGATGAAGCAGCCATTTTGATGAGTGGAAGGAATGCAAAAACAAACTTCCCAGTTGCTGATAACCCAATTGGAAATCACAGTTCAACTTCCTCTTCAACAACATTATCTGCAGTTCTAAGTGCTAAGCTTAGGAAGTGTTGCAAGTCCCCTTCACCTTCCCTCACTTGTCTAAGGCTTGACACTGAGAATTCTCACATTGGGGTGTGGCAAAAGAGAGCAGGCCCTCGTTCTGACTCAAACTGGATCATGATGGTTGAATTGGAAAGGAAAAATGAAGCACCTTCTGGTTCAAAATTGCCTCTTCTTGTTGATACCCCAGAGAAGGTTAAACCAGAAGAAGGGAATGGTTTGGATGATGAACAAAGGATTGCCCTGCAGATGATAGAGGAACTTCTGAATAGGAATTAA 546 0.4396 MVKSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDEAAILMSGRNAKTNFPVADNPIGNHSSTSSSTTLSAVLSAKLRKCCKSPSPSLTCLRLDTENSHIGVWQKRAGPRSDSNWIMMVELERKNEAPSGSKLPLLVDTPEKVKPEEGNGLDDEQRIALQMIEELLNRN* 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g02234 181 CDD AP2 5 65 IPR001471 GO:0003700|GO:0006355
Rops4g02234 181 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Rops4g02234 181 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Rops4g02234 181 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Rops4g02234 181 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 125 - -
Rops4g02234 181 Pfam AP2 domain 6 54 IPR001471 GO:0003700|GO:0006355
Rops4g02234 181 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Rops4g02234 181 FunFam Ethylene-responsive transcription factor 2 5 64 - -
Rops4g02234 181 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677
Rops4g02234 181 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g02234 Rops-Chr4 49014168 49014959 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g02234 1 181 AP2-EREBP Transcription Factor Family AT1G15360 61.809 1.50e-78 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Rops4g02234 AP2 7.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g02234 - - gmx:100796962 294.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops4g02234 4 49014168 49014959 Rops4g02234 4 49014168 49014959 ECH