Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g02233 ATGGAAAGTTGCTTCAAAGGAGGTGATCATTGTTTCAAATCTATTGCTTATCTTCCAGATCTACTACTCCTCTTCCGGATTTGCTTTAGACATGCACTTCTCTTCCATATCTGCTTCAGATCTACTACTCCTTTTCCAGATCTGCTTCAGATCCATTGCAAGAGAAGCTTCAAATTCTTCGTCGTGTTCAAAGAAAGAGCGAGCATGGGTGAATTGAAAGACGCCGAGGCTTACGAGGAAGAGCTCATCGACTACGAAGAAGAAGATGAGAAAGCTCTTGATTCTGCCAAACCTGCTTCTGAAACCACCAAGAAGGGTTATGTAGGGATCCATAGTTCGGGATTTCGAGACTTCCTGTTGAAACCAGAGCTTCTTCGAGCCATTGTAGATTCTGGATTTGAGCATCCTTCAGAAGTGCAACACGAATGCATCCCTCAAGCAATTTTAGGAATGGATGTCATTTGCCAAGCAAAATCTGGGATGGGAAAGACTGCTGTTTTTGTTCTGTCAACACTTCAGCAAATTGATCCTGTTCCTGGTCAAGTTGCGGCTCTTGTTCTTTGCCACACTAGAGAACTAGCTTATCAGATTTGTCATGAATTTGAGAGGTTCAGCACATATCTTCCGGATATAAAGGTTGCTGTTTTCTATGGTGGTGTCAATATCAAGGTTCACAAAGAATTACTCAAGAATGAATGTCCCCATGTTGTTGTTGGAACACCTGGGAGGATTCTTGCTCTGACTAGAGATAAAGACCTTAGTTTAAAGAATGTGAGACATTTTATACTGGATGAGTGTGACAAGATGCTCGAATCACTTGACATGAGAAGAGATGTGCAAGAGATTTTCAAATTGACTCCCCATGATAAACAAGTGATGATGTTTTCAGCTACACTTAGCAAAGAGATACGACCTGTTTGCAAGAAATTTATGCAAGATCCCATGGAAATTTATGTTGATGATGAGGCCAAATTGACTCTTCATGGTCTCGTGCAGCACTACATCAAATTGCAAGAGCCTGAGAAAAATCGTAAGTTGAACGATCTACTTGATGCTTTGGACTTCAACCAAGTTGTTATTTTTGTCAAAAGTGTTAGCCGGGCAGCGGAATTGAACAAGTTGCTTGTGGAGTGTAATTTCCCATCAATCTGCATACATTCTGGAATGTCACAGGAAGAAAGATTGAAAAGATACAAAGGCTTCAAAGAAGGGAAGCAAAGGATTCTCGTGGCAACAGATTTAGTAGGAAGGGGTATTGATATAGAACGTGTTAATATAGTCATCAACTATGACATGCCTGATTCTGCAGATACTTATCTGCACAGGGTGGGAAGAGCTGGTAGATTTGGCACCAAGGGGCTTGCAATTACTTTTGTGTCTTCTACCGGTGATTCTGAAGTTCTTAATCAGGTGCAATCTAGGTTTGAGGTTGATATAAAGGAGCTTCCTGAACAAATTGACACCTCCACATACATGCCAAACTGA 1485 0.4114 MESCFKGGDHCFKSIAYLPDLLLLFRICFRHALLFHICFRSTTPFPDLLQIHCKRSFKFFVVFKERASMGELKDAEAYEEELIDYEEEDEKALDSAKPASETTKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVPGQVAALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKVHKELLKNECPHVVVGTPGRILALTRDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKLTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLQEPEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLKRYKGFKEGKQRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSTGDSEVLNQVQSRFEVDIKELPEQIDTSTYMPN* 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g02233 494 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 111 468 - -
Rops4g02233 494 Coils Coil 68 95 - -
Rops4g02233 494 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 113 141 IPR014014 GO:0003724
Rops4g02233 494 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 144 317 IPR014001 -
Rops4g02233 494 Gene3D - 109 325 IPR027417 -
Rops4g02233 494 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 345 490 IPR001650 -
Rops4g02233 494 Pfam DEAD/DEAH box helicase 138 303 IPR011545 GO:0003676|GO:0005524
Rops4g02233 494 Pfam Helicase conserved C-terminal domain 343 450 IPR001650 -
Rops4g02233 494 FunFam DEAD-box ATP-dependent RNA helicase 326 494 - -
Rops4g02233 494 Gene3D - 326 494 IPR027417 -
Rops4g02233 494 SMART ultradead3 132 333 IPR014001 -
Rops4g02233 494 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 182 466 IPR027417 -
Rops4g02233 494 CDD DEADc_DDX39 112 319 - -
Rops4g02233 494 SMART helicmild6 369 450 IPR001650 -
Rops4g02233 494 CDD SF2_C_DEAD 330 459 - -
Rops4g02233 494 FunFam DEAD-box ATP-dependent RNA helicase 56-like 101 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g02233 Rops-Chr4 48980179 48987423 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g02233 69 494 Eukaryotic Initiation Factors Gene Family AT5G11200 82.906 0.0 749
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g02233 K12812 - gmx:100799082 809.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops4g02233 4 48980179 48987423 Rops4g02233 4 48980179 48987423 ECH