Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g02185 ATGGCCAAAGAAGGTCTTGGACTTGAAATCACTGAGCTAAGGTTGGGTTTGCCCGGTGGAGATTGTGTAGTGAACAAGAATCAGAAGAAGAGGGTGTTCTCCGAGATTGACGGTGGAGGGGATGAAGATAATAGCTGCTCCGGTGACCGGAAAATTGAGAAGAAGAATCAAGTGGTGGGGTGGCCACCGGTGTGTTCTTATCGAAAGAAGAATAGCATGAACGAAGGTTCAAAAATGTACGTGAAGGTTAGCATGGATGGGGCTCCTTTCTTGCGTAAAATTGATTTGGGTATGCATAAGGGGTACTTGGAGTTAGCCTTGGCTTTGGAGAAGCTCTTTGGTTGCTATGGAATGGGGGACGCGTTGAAGGATGCGGACAATTCTGAACACGTTCCCATTTATGAGGACAAAGATGGTGACTGGATGCTGGTTGGAGATGTCCCTTGGGAAATGTTTATTGAGTCATGCAAGAGGCTGAGGATTATGAAGAGATCAGAAGCTCAGGGCTTCGGTCTGCAACCAAAAGGATCTTTAAAGGGATTCATGGAAGGCGTGGCAAAGTGA 564 0.4681 MAKEGLGLEITELRLGLPGGDCVVNKNQKKRVFSEIDGGGDEDNSCSGDRKIEKKNQVVGWPPVCSYRKKNSMNEGSKMYVKVSMDGAPFLRKIDLGMHKGYLELALALEKLFGCYGMGDALKDADNSEHVPIYEDKDGDWMLVGDVPWEMFIESCKRLRIMKRSEAQGFGLQPKGSLKGFMEGVAK* 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g02185 187 Pfam AUX/IAA family 49 170 IPR033389 -
Rops4g02185 187 ProSiteProfiles PB1 domain profile. 78 166 IPR000270 GO:0005515
Rops4g02185 187 SUPERFAMILY CAD & PB1 domains 70 163 - -
Rops4g02185 187 Gene3D - 73 175 - -
Rops4g02185 187 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 7 168 IPR003311 GO:0005634|GO:0006355
Rops4g02185 187 FunFam Auxin-responsive protein 73 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g02185 Rops-Chr4 48285495 48288925 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g02185 36 185 B3 DNA Binding Superfamily AT4G23980 30.667 2.05e-11 60.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Rops4g02185 AUX_IAA 1.7e-45 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g02185 K14484 - gmx:100791342 312.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops4g02185 4 48285495 48288925 Rops7g00177 7 2545535 2549622 PCT