Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g02160 ATGGATTTCTGGCCAGAATTTCTTGCAAGCAGTTCGGGGAGAGAGTTTGTGGCAGGAGGGTTTGGAGGCACTGCTGGTATAATCTCTGGTTATCCACTTGACACACTCCGAATCAGGCAACAGAACTCAAAAGCTGGGTCTGCCTTCAGTATCCTTAGACATATGATAGCTAGGGAAGGACCAGCTTCTCTGTACCGTGGCATGGCAGCACCATTGGCCTCCGTTTCATTTCAGAACGCTGTGGTTTTCCAAACTTACGCAGTTCTCTCAAGGGCATTTGGCTCATCTGTGTCTGCTAAAGACCCTCCTTCTTACAAAGGCGTTGCTCTAGGAGGATTTGGCACCGGGGCTCTCCAAAGTTTATTGCTTTCCCCTGTAGAATTGGTTAAAATTCGACTCCAACTGCAGAACACAAGCCAGACAACAGAACCTGGAAAAGGTCCCATGAGGGTCGCTAAAAATATATGGAAAACAGAAGGTCTTCGTGGTATTTATCGAGGACTTGGCATCACTGTGATGAGGGATGTACCTTCTCATGGTGTCTACTTCTGGACATATGAATACATGAGAGAACAACTTCACCCAGGATGCAGAAAAAGTGGTCAAGAAAGTATAAATACCATGTTATTATCGGGAGGATTAGCTGGGGTAGCAAGTTGGATTTGTTGCTACCCTTTTGATGTTGTAAAGACAAGACTACAAGCTCAAACACCCTCTTCACTGAAATACAAAGGCATTTTTGATTGCTTTAAAAAAAGCATAAACGAAGAAGGTTACATTGTGCTATGGCGGGGTTTGGGAACTGCAGTTGCCAGAGCATTCTTAGTAAATGGTGCCATATTTTCTGCTTACGAGATTACACTAAGATTTCTGTTTAACAATGGCATTCAAATGCAGGAAACAATTTAG 909 0.4378 MDFWPEFLASSSGREFVAGGFGGTAGIISGYPLDTLRIRQQNSKAGSAFSILRHMIAREGPASLYRGMAAPLASVSFQNAVVFQTYAVLSRAFGSSVSAKDPPSYKGVALGGFGTGALQSLLLSPVELVKIRLQLQNTSQTTEPGKGPMRVAKNIWKTEGLRGIYRGLGITVMRDVPSHGVYFWTYEYMREQLHPGCRKSGQESINTMLLSGGLAGVASWICCYPFDVVKTRLQAQTPSSLKYKGIFDCFKKSINEEGYIVLWRGLGTAVARAFLVNGAIFSAYEITLRFLFNNGIQMQETI* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g02160 302 Pfam Mitochondrial carrier protein 207 294 IPR018108 -
Rops4g02160 302 Pfam Mitochondrial carrier protein 110 193 IPR018108 -
Rops4g02160 302 Pfam Mitochondrial carrier protein 12 94 IPR018108 -
Rops4g02160 302 ProSiteProfiles Solute carrier (Solcar) repeat profile. 10 92 IPR018108 -
Rops4g02160 302 FunFam Mitochondrial arginine transporter BAC2 11 300 - -
Rops4g02160 302 ProSiteProfiles Solute carrier (Solcar) repeat profile. 203 290 IPR018108 -
Rops4g02160 302 SUPERFAMILY Mitochondrial carrier 14 285 IPR023395 -
Rops4g02160 302 Gene3D Mitochondrial carrier domain 13 299 IPR023395 -
Rops4g02160 302 ProSiteProfiles Solute carrier (Solcar) repeat profile. 103 192 IPR018108 -
Rops4g02160 302 PRINTS Mitochondrial carrier protein signature 118 136 IPR002067 GO:0055085
Rops4g02160 302 PRINTS Mitochondrial carrier protein signature 165 183 IPR002067 GO:0055085
Rops4g02160 302 PRINTS Mitochondrial carrier protein signature 212 234 IPR002067 GO:0055085
Rops4g02160 302 PRINTS Mitochondrial carrier protein signature 15 28 IPR002067 GO:0055085
Rops4g02160 302 PANTHER MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED 10 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g02160 Rops-Chr4 48033744 48036377 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g02160 1 294 Antiporters AT1G79900 71.525 1.18e-145 409
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g02160 K15109 - gmx:100812056 525.398
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops4g02160 4 48033744 48036377 Rops4g02160 4 48033744 48036377 ECH